A-J-F-Mackintosh/Mackintosh_et_al_2023_rearrangement_fixation

Python Dependencies

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aidan-gibson commented

Can you ensure the reproducibility of your python by posting the dependencies? Thanks!

A-J-F-Mackintosh commented

Hi,

All the python scripts require docopt and anc_sweep_simulator requires msprime.

I have added this to the README. I will close this issue, but if you have questions about a particular script then please open another.

aidan-gibson commented

Yep! I mean what versions of the dependencies. If you used base python or venv this can be had via pip freeze (python --version would also be handy!) If you used a conda environment this can be had via conda env export > conda_env.yml. Thanks a bunch for publishing your code! This just ensures people in the future can run it as well.