AdrianBZG/storm-bio-sources

Integrate data from IntOGen on mutation frequency per cancer type

Opened this issue 5 years ago · 4 comments

AdrianBZG commented 5 years ago

Integrate data from IntOGen on mutation frequency per cancer type

AdrianBZG commented 5 years ago

Try this: https://www.intogen.org/tsv?gene=CLCC1&c=cancer_type_gene&s=%5B%28%27MUTS_PAM_SAMPLES%27%2C+-1%29%5D&f=intogen-CLCC1-frequency-data.tsv ?

AdrianBZG commented 5 years ago

Nope, better:

Go to each of the cancer types in the homepage, e.g. https://www.intogen.org/search?cancer=UCEC, and get the tables from there. Then just integrate.

AdrianBZG commented 5 years ago

Use the latest release from https://www.intogen.org/download

AdrianBZG commented 5 years ago

We don't really need this (no interest).