Pinned Repositories
Ahhgust.github.io
Demixtify
Exome2Proteome
Converts exome sequencing data into predicted proteins in FASTA format. It does so retaining *phase* (CIS variation)
Haplotypical
Haplotype inference from MPS data
MPSOnWindows
Standard next generation / massively parallel sequencing tools compiled for windows. Includes samtools, bwa and tabix!
PeptideRMP
Pycision
Parses bam files and extracts haplotypes
RtN
SeqLib
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
STRaitRazor
Ahhgust's Repositories
Ahhgust/STRaitRazor
Ahhgust/Pycision
Parses bam files and extracts haplotypes
Ahhgust/RtN
Ahhgust/Haplotypical
Haplotype inference from MPS data
Ahhgust/MPSOnWindows
Standard next generation / massively parallel sequencing tools compiled for windows. Includes samtools, bwa and tabix!
Ahhgust/Demixtify
Ahhgust/PeptideRMP
Ahhgust/SeqLib
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
Ahhgust/Ahhgust.github.io
Ahhgust/Exome2Proteome
Converts exome sequencing data into predicted proteins in FASTA format. It does so retaining *phase* (CIS variation)
Ahhgust/FishAndSnpChips
Estimates genotype likelihoods for Illumina SNP-chip data. Designed for low-template samples
Ahhgust/IMGC
Ahhgust/GTCtoVCF
Script to convert GTC/BPM files to VCF
Ahhgust/ksw2
Global alignment and alignment extension
Ahhgust/MacrohapSimulator
Ahhgust/math-as-code
a cheat-sheet for mathematical notation in code form
Ahhgust/MitoDB
Mitomixture database!
Ahhgust/MMDIT
Mitochondrial mixture analysis in R
Ahhgust/Neutralome
Source code necessary to model diversity throughout the genome.
Ahhgust/ped-sim
Pedigree simulator
Ahhgust/PeptideLR
Semicontinuous likelihood ratios for peptides!
Ahhgust/RSQLite
R interface for SQLite
Ahhgust/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Ahhgust/singularity
SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.