How to export to a TIFF or svs ？

[shenxiaochenn]

In fact, is there a way to output czi to TIFF format or svs format？ That way, it can be opened in the openslide for further analysis. In daily use, I think maybe openslide is really good and convenient. Thanks!

[evamaxfield]

Hey @shenxiaochenn. This package is only for reading CZI files. However our related package aicsimageio uses this package to enable reading CZIs and then writing TIFFs with the same pixel data.

an example:

from aicsimageio import AICSImage
from aicsimageio.writers import OmeTiffWriter

image = AICSImage("your-czi-file-path.czi")
OmeTiffWriter.save(
    image.data,
    "new-file.ome.tiff",
    dim_order=image.dims.order,
    channel_names=image.channel_names,
)