AllenCellModeling/aicspylibczi

Coordinates Overspecified Exception with certain Mosaic files

dimi-huer opened this issue · 0 comments

I discovered it when I tried opening a tilescan with aicsimageio. So, I created a library with any type of possible combinations of dimensions: M, S, T and Z with two channels.

Versions of packages I was using:

python: 3.8.5
aicspylibczi: 2.7.6
aicsimageio: 3.3.3
czifile: 2019.7.2

If I try to open tilescans (all of them with two channels) with only tiles, tiles and time, tiles and z, or tiles, time and z I get an error in line 57 of the file aicspylibczi/CziFile.py: _aicspylibczi.PylibCZI_CDimCoordinatesOverspecifiedException

However, if I have positions (S) as an additional dimension I don't get this error, but I do get the same behaviour as already specified in the issue here: [AllenCellModeling/aicsimageio/issues/163].

I tried using CziFile in terminal, but also from scripts, starting with AICSImage or CziReader. In contrary, if I use the package czifile everything works smoothly and I can load any of the files.

I can provide the file library I created via E-Mail.

Originally posted by @dimi-huer in #62 (comment)