Altius/hotspot2

tallyCountsInSmallWindows.cpp assumes chromSizes file has 2 columns (not BED input)

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erynes commented

I've been working with files of chromosome sizes of the form

chr1 249250621
chr2 243199373
etc.

Currently, tallyCountsInSmallWindows.cpp assumes input in this format, with the ordering (presumably either {chr1, chr2, etc.} or sort-bed order) immaterial. Function loadChromSizes() should count columns and allow for either this format or BED (3-column) format.

erynes commented

Closed via commit 2aa3c35.