Pinned Repositories
AnomeINDEL
Identifying Long Indels from BAM
aztk-backup
AZTK powered by Azure Batch: On-demand, Dockerized, Spark Jobs on Azure
bdg-formats
Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
console-icons
Repository for graphics used on the SeqsLab management console home page (https://console.seqslab.net/)
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
docs-ui
Customized UI bundle for the Antora documentation site
seqslabapps
sga
de novo sequence assembler using string graphs
svaba
Structural variation and indel detection by local assembly
tensorflow
Computation using data flow graphs for scalable machine learning
Atgenomix's Repositories
AnomeGAP/adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
AnomeGAP/AnomeINDEL
Identifying Long Indels from BAM
AnomeGAP/aztk-backup
AZTK powered by Azure Batch: On-demand, Dockerized, Spark Jobs on Azure
AnomeGAP/bdg-formats
Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
AnomeGAP/console-icons
Repository for graphics used on the SeqsLab management console home page (https://console.seqslab.net/)
AnomeGAP/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
AnomeGAP/docs-ui
Customized UI bundle for the Antora documentation site
AnomeGAP/seqslabapps
AnomeGAP/sga
de novo sequence assembler using string graphs
AnomeGAP/svaba
Structural variation and indel detection by local assembly
AnomeGAP/tensorflow
Computation using data flow graphs for scalable machine learning
AnomeGAP/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
AnomeGAP/hdfscontents
A HDFS-backed ContentsManager implementation for IPython
AnomeGAP/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
AnomeGAP/pydoop
A Python MapReduce and HDFS API for Hadoop
AnomeGAP/utils
General (non-omics) code used across BDG products. Apache 2 licensed.