AntonBankevich/LJA

Multiple kmer options or automated kmer selection

tpriest0 opened this issue · 0 comments

Hello,
Firstly, thank you for the development of a HiFi specific assembly tool! I was wondering if there are plans to modify the kmer selection parameter? Currently, the user has to select a specific kmer, which can take some time to run multiple assemblies and determine the optimal value. Are there any plans to perform an automated, iterative kmer selection step? Such that multiple kmer values will be chosen and the one resulting in the most contiguous contigs kept?
Many thanks