AntonBankevich/LJA

run_rr.py: No such file or directory

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xiekunwhy commented

Hi,

I got error when run LJA "/Bio/Linux-src-files/NGS/Genome_assemblers/HiFI/LJA/bin/run_rr.py: No such file or directory" after about 1 day running. run_rr.py not in bin directory but in py directory, no document to tell us how to install it in the right way.

Best,
Kun

AntonBankevich commented

Hi. This happened because you did not run "make install" after make as instructed in the installation manual. Though the fact that you had to find this out after most of the assembly process was finished is unfortunate and I will make sure to fix it. For now you can run make install to fix the problem. Also you can avoid repeating most of the calculations if you run the same lja command but with additional parameter --restart-from phase2.

xiekunwhy commented

Hi. Things worked, but you are forget to mention yaml module in the manual, And run_rr.py crashed again.