Newest version of dplyr (1.1) requires code changes

[nohelix]

In dplyr 1.1.0 main fails due to line 316's left_join argument all.x = TRUE
trial_data = dplyr::left_join(x = trial_data_encoded, y = dplyr::select(run_properties$stim_encoding_table, -Repeat_number, -``Delay (s)``), by = "Stim_ID", all.x = TRUE)

It works on the prior 1.0.10 version of dplyr.

In the newer 1.1 version, you get the fatal error:

Error in dplyr::left_join(x = trial_data_encoded, y = dplyr::select(run_properties$stim_encoding_table, :
... must be empty.
✖ Problematic argument:
• all.x = TRUE

If you remove the all.x = TRUE argument, the file processes with the additional warnings:

Warning: Returning more (or less) than 1 row per summarise() group was deprecated in dplyr 1.1.0.
ℹ Please use reframe() instead.
ℹ When switching from summarise() to reframe(), remember that reframe() always returns an ungrouped data frame and
adjust accordingly.
Call lifecycle::last_lifecycle_warnings() to see where this warning was generated.
Warning: Returning more (or less) than 1 row per summarise() group was deprecated in dplyr 1.1.0.
ℹ Please use reframe() instead.
ℹ When switching from summarise() to reframe(), remember that reframe() always returns an ungrouped data frame and
adjust accordingly.
Call lifecycle::last_lifecycle_warnings() to see where this warning was generated.
Analysis type: BBN Mixed Duration
Warning in left_join(need_evaluation, r, by = groupings) :
Each row in x is expected to match at most 1 row in y.
ℹ Row 1 of x matches multiple rows.
ℹ If multiple matches are expected, set multiple = "all" to silence this warning.

[nohelix]

I have tried to roll back the computer experiencing these issues to 1.0.10 but it fails to build correctly.

In the mean time, I am not allowing UGs to use that computer

[nohelix]

From tidyverse/dplyr#6262 or lionel-/lillies@6d0d31f

Don't supply all.x to left_join()
This is not an actual argument of left_join() and it is now stricter in what it accepts

[nohelix]

I have managed to install the old version of dply on all the lab computers so I made this low priority.

https://dplyr.tidyverse.org/news/index.html

Changes I know will affect the code:

• transmute() is superseded in favour of mutate(.keep = "none")
• [case_when()] should now have .default = NULL that should replace TRUE ~
• lines 1092 to 1103 I believe we just need to add the multiple = "all" but need to double check that its expected that there are more than 1 row mach in the 2 tables
• if its expected that we should get a 1 row table, replace summarise with reframe. This may apply more generally when we expect summarise to change the number of rows

[tofof]

The all.x is fixed by 4be52ce. The summarize/reframe issue is still outstanding.

[nohelix]

Warning: Returning more (or less) than 1 row per summarise() group was deprecated in dplyr 1.1.0.
i Please use reframe() instead.
i When switching from summarise() to reframe(), remember that reframe() always returns an ungrouped data frame and adjust accordingly.

This can be caused by a blank table return.
run_archive.zip

Reproduce:
Blue1 on 8/9/23 in supervisor-custom
line 598 (df_Rxn) returns a blank table at:
r %>% unnest(reaction) %>% dplyr::filter(task != "TH" & Dur (ms)== duration_current &Inten (dB) %in% c(55,65))
resulting in this warning.

[nohelix]

Still Happening in Main so haven't closed yet:

Loading file... C:\Users\Noelle\AppData\Local\Temp\RtmpknhrcR/86765e9c027e6ce4c27df80c/0.mat
Stim file: BBN_20-80dB_100ms_8s
Trials: 473 Hit%: 84.3 FA%: 6.3
Warning: Returning more (or less) than 1 row per summarise() group was deprecated in dplyr 1.1.0.
ℹ Please use reframe() instead.
ℹ When switching from summarise() to reframe(), remember that reframe() always returns an ungrouped data frame and adjust accordingly.
Call lifecycle::last_lifecycle_warnings() to see where this warning was generated.
Warning: Returning more (or less) than 1 row per summarise() group was deprecated in dplyr 1.1.0.
ℹ Please use reframe() instead.
ℹ When switching from summarise() to reframe(), remember that reframe() always returns an ungrouped data frame and adjust accordingly.
Call lifecycle::last_lifecycle_warnings() to see where this warning was generated.
Analysis type: BBN (Standard)
Calculated run statistics.
Filename checks complete.
Weight checks complete.
Warning in Check_Performance_Cutoffs() : Low hit rate: 84.3%

Performance checks complete.
Archiving Run... Trials... Rat...
Run 20240127112732_178.192998468876_1.92546067375806 of Orange1 (#315) added to archives (in environment ONLY).

Run 20240127112732_178.192998468876_1.92546067375806 of Orange1 (#315) saved to disk.