BCCDC-PHL/auto-ncov

Issues

• Create separate modules for `pre_analysis`, `analysis` and `post_analysis`

  #21 opened 3 months ago by dfornika
  0

• Put Ct_combo as 0 if not available in metadata

  #19 opened 3 months ago by taranewman
  0

• Add BCCDC-PHL/basic-sequence-qc (fastp) to front of analysis

  #18 opened a year ago by dfornika
  0

• Remove pangolin-nf from analysis

  #16 opened a year ago by dfornika
  0

• Make `dependencies` key optional in pipeline config

  #3 opened a year ago by dfornika
  0

• Generate QC Summary

  #14 opened 2 years ago by dfornika
  0

• Fix documentation

  #12 opened 2 years ago by dfornika
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• Documentation

  #10 opened 2 years ago by dfornika
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• Add automated metadata collection

  #8 opened 2 years ago by dfornika
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• Add pangolin analysis

  #6 opened 2 years ago by dfornika
  0

• Add BCCDC-PHL/ncov-recombinant-nf analysis

  #4 opened 2 years ago by dfornika
  0

• Incorporate excluded runs list

  #1 opened 2 years ago by dfornika
  0