/snippy-variants

Perform read mapping and variant calling using snippy

Primary LanguageNextflow

snippy-variants

Perform read mapping and variant calling using snippy.

Usage

nextflow run BCCDC-PHL/snippy-variants \
  --ref </path/to/ref.fa> \
  --fastq_input </path/to/fastqs> \
  --outdir </path/to/output_dir>