BCCDC-PHL/symlink-seqs

Issues

• Exclude failed runs

  #31 opened 9 months ago by JamesZlosnik
  1

• Calling with no parameters will symlink every FASTQ

  #36 opened 9 months ago by jpalmer37
  0

• Add GitHub Actions testing workflow

  #33 opened 9 months ago by dfornika
  0

• Support finding demultiplexing-specific SampleSheet for new MiSeq directory structure

  #35 opened 9 months ago by dfornika
  0

• Debugging print statement left in

  #29 opened a year ago by dfornika
  0

• Samples not symlinked if project ID is empty in SampleSheet

  #27 opened a year ago by dfornika
  0

• `IndexError: list index out of range` in `find_miseq_fastq_subdir()`

  #25 opened a year ago by dfornika
  1

• Convert underscores in SampleSheet sample IDs to dashes, to match fastq files

  #23 opened 2 years ago by dfornika
  1

• When supplying a run ID and project ID, symlinked seqs are not limited to the specified project

  #21 opened 2 years ago by dfornika
  0

• Error when no `--ids-file` supplied for NextSeq run

  #19 opened 2 years ago by dfornika
  0

• Symlink all samples on a run when a run ID is supplied with no sample IDs file

  #17 opened 2 years ago by dfornika
  0

• Add csv mode

  #15 opened 2 years ago by dfornika
  0

• Crash on NextSeq run when `Analysis` dir is not present in top-level of run dir

  #12 opened 2 years ago by dfornika
  0

• Support new MiSeq output directory structure

  #7 opened 2 years ago by dfornika
  0

• Find the correct SampleSheet on NextSeq runs

  #8 opened 2 years ago by dfornika
  0

• For NextSeq runs, use most recent Analysis subdir

  #5 opened 3 years ago by dfornika
  0

• Add support for optional `--ids-file` to select specific samples by sample ID

  #2 opened 3 years ago by dfornika
  0

• Add `--copy` flag to support copying instead of symlinking

  #1 opened 3 years ago by dfornika
  0