BDehapiot

ScopeM, ETHZürich, Switzerland

Pinned Repositories

ETH-ScopeM_Hepner
Extract numerical data from bmp image plots
Language:Python10
BDCourse_Digital-Image-Processing
Introduction to Digital Image Processing
Language:Python00
BDCourse_Python_FlyScan
Set up an automated fly detection procedure with Python
Language:Jupyter Notebook00
BDCourse_Python_ImageDataAnalysis
Learn basic Python applied to image data analysis
Language:Jupyter Notebook00
BDCourse_Python_StackProcessing
Open, process and save image stacks with Python
Language:Jupyter Notebook00
BDehapiot.github.io
Personal web page (in progress)
Language:HTML00
BDProject_USeg
All in one Napari interface to segment and track epithelial cells
Language:Python00
bdtools
Collection of tools to handle recurring tasks
Language:Python00
CENTURI_Kolley_FDomMuscle_2D
Automated sarcomeric patterns detection in muscle fibers (2D)
Language:C++00
CENTURI_Mao_FDomMuscle
Automated sarcomeric patterns detection in muscle fibers (1D)
Language:MATLAB00

BDehapiot's Repositories

BDehapiot/ETH-ScopeM_DLsuite
Deep Learning suite for image segmentation
Language:Python
BDehapiot/bdtools
Collection of tools to handle recurring tasks
Language:Python
BDehapiot/ETH-ScopeM_Gassler
Analysis of fungi spore germination
Language:Python
BDehapiot/ETH-ScopeM_Meschichi
3D segmentation of plant nuclei sub-domains
Language:Python
BDehapiot/ETH-ScopeM_Concrete
Concrete rebar CT scan analysis tool
Language:Python
BDehapiot/ETH-ScopeM_Bruderer
Budding yeast membrane colocalization analysis
Language:Python
BDehapiot/ETH-ScopeM_DaSilva
Brightfield organoid segmentation
Language:Python
BDehapiot/ETH-ScopeM_Gkountidi
Measuring lymphatic vessel contractions
Language:Python
BDehapiot/ETH-ScopeM_Farcas
Analysis of budding yeast cleavage furrow proteins
Language:ImageJ Macro
BDehapiot/ETH-ScopeM_Arora
Phase-separated liquid droplets classification
Language:Python
BDehapiot/ETH-ScopeM_Masschelein
Muscular blood vessel analysis tool
Language:Python
BDehapiot/ETH-ScopeM_Erega
3D segmentation of bacterial colony habitats
Language:ImageJ Macro
BDehapiot/Template-Repo_Fiji
Template repository for Fiji-based projects
Language:Python
BDehapiot/ETH-ScopeM_Zsok
Nuclear Pore Complex (NPC) detection and fluo. quantification
Language:Python
BDehapiot/ETH-ScopeM_CZITools
CZI file handling tools
Language:Python
BDehapiot/ETH-ScopeM_Bianco
Nuclear fluo. int. GFP-tagged proteins in S. cerevisiae
Language:Python
BDehapiot/ETH-ScopeM_Hepner
Extract numerical data from bmp image plots
Language:Python1
BDehapiot/CENTURI_Poulain_GlobSeg
Red blood cell segmentation with StarDist
Language:Python
BDehapiot/CENTURI_Tessier_Microglia
Semi-automated microglia detection and dynamics
Language:Python
BDehapiot/CENTURI_Mao_FDomMuscle
Automated sarcomeric patterns detection in muscle fibers (1D)
Language:MATLAB
BDehapiot/CENTURI_Kolley_FDomMuscle_2D
Automated sarcomeric patterns detection in muscle fibers (2D)
Language:C++
BDehapiot/BDCourse_Python_ImageDataAnalysis
Learn basic Python applied to image data analysis
Language:Jupyter Notebook
BDehapiot/BDCourse_Python_FlyScan
Set up an automated fly detection procedure with Python
Language:Jupyter Notebook
BDehapiot/BDCourse_Python_StackProcessing
Open, process and save image stacks with Python
Language:Jupyter Notebook
BDehapiot/Template-Repo_Python
Template repository for Python-based projects
Language:Python
BDehapiot/CENTURI_Mundhe_PulseSelect
Manual selection of MyoII pulses using Napari
Language:Python
BDehapiot/ETH-ScopeM_CapsSeg
Microcapsule segmentation tool
Language:Python
BDehapiot/ETH-ScopeM_Kloter
Measure pH-Lemon sensor fluo. int. ratio
Language:ImageJ Macro
BDehapiot/ETH-ScopeM_Han
3D visualization in Napari
Language:Python
BDehapiot/BDehapiot.github.io
Personal web page (in progress)
Language:HTML