Pinned Repositories
FR3D
The official repository for "Find RNA 3D" (FR3D), a suite of programs for searching RNA 3D structures.
fr3d-python
Python implementation of the FR3D software for searching and annotating RNA 3D structures
JAR3D
Java-based Alignment of RNA using 3D structure
R3DAlign
The official repository for R3DAlign, a program for aligning RNA 3D structures.
RNA-3D-Hub
Resources for RNA Structural Bioinformatics: RNA 3D Motif Atlas, RNA Non-redundant Lists, RNA Structure Atlas
RNA-3D-Hub-core
New resources for RNA Structural Bioinformatics: RNA 3D Motif Atlas, RNA Non-redundant Lists, RNA Structure Atlas (motif extraction and classification, database management)
RNA-Structure-utils
Some utilities for dealing with RNA structure
rnao
Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures
UnitIdTranslation
Translate unit Ids from old to new formats
WebR3DAlign
Web application for locally optimized, nucleotide to nucleotide pairwise alignments of RNA 3D structures
BGSU RNA Bioinformatics's Repositories
BGSU-RNA/fr3d-python
Python implementation of the FR3D software for searching and annotating RNA 3D structures
BGSU-RNA/FR3D
The official repository for "Find RNA 3D" (FR3D), a suite of programs for searching RNA 3D structures.
BGSU-RNA/RNA-3D-Hub-core
New resources for RNA Structural Bioinformatics: RNA 3D Motif Atlas, RNA Non-redundant Lists, RNA Structure Atlas (motif extraction and classification, database management)
BGSU-RNA/RNA-Structure-utils
Some utilities for dealing with RNA structure
BGSU-RNA/JAR3D
Java-based Alignment of RNA using 3D structure
BGSU-RNA/RNA-3D-Hub
Resources for RNA Structural Bioinformatics: RNA 3D Motif Atlas, RNA Non-redundant Lists, RNA Structure Atlas
BGSU-RNA/R3DAlign
The official repository for R3DAlign, a program for aligning RNA 3D structures.
BGSU-RNA/rnao
Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures
BGSU-RNA/alignment-server-dev
Development of "alignment server" in conjunction with the Gutell Lab at UT-Austin.
BGSU-RNA/FR3D_history
This repository contains all archived versions of FR3D committed to one repository. Has only historical interest. Not maintained.
BGSU-RNA/heatmap
Basepair Catalog implemented on NDB
BGSU-RNA/JAR3D-Website
JAR3D webserver for matching RNA loop sequences with RNA 3D motifs
BGSU-RNA/UnitIdTranslation
Translate unit Ids from old to new formats
BGSU-RNA/WebFR3D
Web application for searching RNA 3D structures.
BGSU-RNA/WebR3DAlign
Web application for locally optimized, nucleotide to nucleotide pairwise alignments of RNA 3D structures
BGSU-RNA/3D-structure-coloring
Methods and data files to color RNA 3D structures
BGSU-RNA/base-stacking-catalog
RNA Base-stacking Catalog
BGSU-RNA/ConformationalChange
Matlab programs to detect local and large-scale conformational changes in RNA 3D structures
BGSU-RNA/loop-extraction-benchmark
BGSU-RNA/ribosome-functional-annotation
Python code for inferring ribosomal chain, tRNA occupancy, and bound protein factors/ligands
BGSU-RNA/RNA-3D-correspondence
Web application for comparing and visualising RNA 3D motifs across many 3D structures
BGSU-RNA/RNA-base-triples
Matlab code to model, find, and count RNA base triples
BGSU-RNA/rna-protein-stacking
A place to put code for displaying RNA protein interaction data