Undeclared dependency, xfmavg depends on octave
Closed this issue · 4 comments
xfmavg generates an .m file and runs it through octave, which isn't listed in the dependencies of minc-toolkit
When it fails, it gives a cryptic error of xfmavg died on line 314
Vladimir,
Where do you source xfmavg from in mind-toolkit? I just went looking for it with no luck? I have been making a repo of all these extras here:
https://github.com/BIC-MNI/minc-widgets
This is sort of my version of conglomerate. As for the bug itself yes including octave will fix it but I should also output an error message rather than the cryptic version. I can submit a fix to this in mind-widgets but wanted to make sure that you would then pick this up. Feel free to add an example CMAKE build file to mind-widgets for the version arguments and I'll make it work! I know how to do this in automake but haven't got around to figuring out how to do this with CMAKE. You'll note that most of the scripts have a PACKAGE, VERSION and PACKAGE_BUGREPORT variable def at the top all ready for this.
https://github.com/BIC-MNI/minc-widgets/blob/master/gennlxfm/gennlxfm#L22
Thanks
a
I've made a commit to minc-widgets here:
This should resolve this depending on where Vladimir sources xfmavg from.
Currently i have it here: https://github.com/BIC-MNI/EZminc/blob/master/scripts/xfmavg
Ah, there it is.
Perhaps best to add minc-widgets as a submodule, I see the CmakeLists.txt you have in that directory is close to what I want but doesn't have the version or maintainer info.
I have added the skeleton version for now based upon yours but haven't tested it.
a