NotImplementedError: "intersectBed" does not appear to be installed

Question

NotImplementedError: "intersectBed" does not appear to be installed

Closed this issue 3 years ago · 2 comments

thanks, @wkopp for solving the previous issue.
I have installed bedtools still getting this error.
Even, tried this command:
import os
from pybedtools import BedTool
please can you tell me where I am going wrong this time?
Thankyou.

starboyvarun commented 3 years ago

@rekado

Answer 1 · 2021-08-27T06:53:11.000Z

Please don't ping me.

You don't have bedtools on the PATH. The PATH variable is how the shell --- and pybedtools --- discovers the individual bedtools executables at runtime.