BaderLab/saber

Issues

• Installing the package

  #200 opened a year ago by omermesser
  0

• Tensorflow error while the container running

  #199 opened 4 years ago by laleye
  1

• Error with sb.load('PRGE')

  #198 opened 4 years ago by sammiyo
  1

• reproduce a score

  #197 opened 4 years ago by chiyuan1126
  2

• Cannot evaluate model with a suggested workaround

  #187 opened 4 years ago by albinafisher
  5

• SABER not working with recent keras/tensorflow versions

  #196 opened 4 years ago by DmitryMalishev
  1

• Load BioBERT weights

  #135 opened 6 years ago by JohnGiorgi
  9

• Expose pretrained model performance and evaluation datasets

  #189 opened 5 years ago by swartchris8
  1

• Cannot install saber (broken library dependencies)

  #185 opened 5 years ago by albinafisher
  2

• Update to Transformers 2.0 API

  #181 opened 5 years ago by JohnGiorgi
  0

• Switch to AutoModel API

  #174 opened 5 years ago by JohnGiorgi
  0

• Drop Embeddings class

  #171 opened 5 years ago by JohnGiorgi
  0

• AMP only works on CUDA devices

  #167 opened 5 years ago by JohnGiorgi
  0

• Providing both k_folds and validation_split argument should work

  #154 opened 5 years ago by JohnGiorgi
  0

• Truncating should effect only the train set

  #166 opened 5 years ago by JohnGiorgi
  0

• Remove large files from commit history

  #142 opened 5 years ago by JohnGiorgi
  0

• Implement mixed precision training

  #160 opened 5 years ago by JohnGiorgi
  0

• Update BERT based models to use new PyTorch Transformer API

  #159 opened 5 years ago by JohnGiorgi
  0

• Better control over type of training strategy

  #150 opened 5 years ago by JohnGiorgi
  0

• Pad sequences with something other than keras.preprocessing.text

  #158 opened 5 years ago by JohnGiorgi
  0

• Easy way to evaluate a model

  #125 opened 6 years ago by JohnGiorgi
  0

• Add pre-trained model to Google Drive

  #134 opened 5 years ago by JohnGiorgi
  0

• Better Batching

  #130 opened 5 years ago by JohnGiorgi
  0

• Swap out time comments with decorators

  #156 opened 5 years ago by JohnGiorgi
  0

• Loading models that don't exist should throw an error.

  #155 opened 5 years ago by JohnGiorgi
  0

• Config file needs to be re-written to better handle multiple models

  #120 opened 6 years ago by JohnGiorgi
  0

• Fix Bert Preprocessing

  #133 opened 5 years ago by JohnGiorgi
  0

• Switch to absolute imports

  #144 opened 5 years ago by JohnGiorgi
  0

• Splitting of training data should be model agnostic.

  #153 opened 5 years ago by JohnGiorgi
  0

• Switch token alignment to SpaCy

  #152 opened 5 years ago by JohnGiorgi
  0

• Change default save directory

  #145 opened 5 years ago by JohnGiorgi
  0

• Metrics class should behave more like Keras's default History Callback

  #149 opened 5 years ago by JohnGiorgi
  0

• Try out new grounding service

  #147 opened 5 years ago by JohnGiorgi
  0

• saber.load_dataset() should be able to pull from pubannotation.

  #146 opened 5 years ago by JohnGiorgi
  0

• Multi-task BERT

  #139 opened 5 years ago by JohnGiorgi
  0

• Optimizers not being reset during cross-validation

  #137 opened 5 years ago by JohnGiorgi
  0

• Need nicely formatted string representation of a PyTorch model

  #140 opened 5 years ago by JohnGiorgi
  0

• NeuralCoref is now on pip

  #127 opened 6 years ago by JohnGiorgi
  0

• Simplify BiLSTM-CRF Architecture

  #129 opened 6 years ago by JohnGiorgi
  0

• Switch to SciSpacy

  #136 opened 6 years ago by JohnGiorgi
  0

• Evaluation is slow

  #132 opened 6 years ago by JohnGiorgi
  0

• Try Yogi Optimizer

  #106 opened 6 years ago by JohnGiorgi
  0

• Better Handling of Rare Words

  #131 opened 6 years ago by JohnGiorgi
  0

• Dependabot can't evaluate your Python dependency files

  #122 opened 6 years ago by dependabot-preview
  0

• Update long description in setup.py

  #113 opened 6 years ago by JohnGiorgi
  0

• Move models from repository to cloud

  #114 opened 6 years ago by JohnGiorgi
  8

• DISO model

  #100 opened 6 years ago by rishabh279
  5

• Multi-task learning leads to NaNs

  #97 opened 6 years ago by JohnGiorgi
  1

• Argument `fine_tune_word_embeddings` has no effect when transfer learning

  #105 opened 6 years ago by JohnGiorgi
  0

• Use Google Colab for a tutorial

  #103 opened 6 years ago by JohnGiorgi
  0