AttributeError: module 'cell2location' has no attribute 'run_c2l'
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Lee-jiahao commented
- [yes ] I have confirmed this bug exists on the latest version of cell2location. See https://github.com/BayraktarLab/cell2location#installation
- [yes ] I follow the instructions from the scvi-tools tutorial.
I followed this tutorial (https://cell2location.readthedocs.io/en/latest/notebooks/cell2location_for_NanostringWTA.html) to run cell2location on NanostringWTA data. But when I run the function cell2location.run_c2l.run_cell2location, it always reports the error AttributeError: module 'cell2location' has no attribute 'run_c2l'.
The version of my cell2location is 0.1.4
>>> cell2location.run_c2l.run_cell2location(meanExpression_sc, adata_wta,
... model_name=cell2location.models.LocationModelWTA,
... train_args={'use_raw': False},
... model_kwargs={
... "Y_data" : counts_negativeProbes,
... "cell_number_prior" : {'cells_per_spot': counts_nuclei, 'factors_per_spot': 6, 'combs_per_spot': 3},
... "cell_number_var_prior" : {'cells_mean_var_ratio': 1, 'factors_mean_var_ratio': 1, 'combs_mean_var_ratio': 1}})
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
AttributeError: module 'cell2location' has no attribute 'run_c2l'