Benjamin-Lee
NIH-OxCam scholar at @ncbi & DPhil student at Oxford. Previously @Harvard CS '20 and @IQTLabs
Oxford, UK
Pinned Repositories
circkit
High-performance circular sequence manipulation
CodonAdaptationIndex
Python Implementation of Codon Adaption Index
deep-rules
Ten Quick Tips for Deep Learning in Biology
DNAvisualization.org
🧬📈 Turn DNA sequences into interactive visualizations
squiggle
📈 DNA Sequence Visualization for Humans
vdsearch
Viroid-like circRNA discovery and analysis suite
viroiddb
A curated database of all available viroid-like RNA sequences
freqgen
🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
squiggle
📈 DNA Sequence Visualization for Humans
MechWolf
⚙️🐺 Robotic chemistry made easy
Benjamin-Lee's Repositories
Benjamin-Lee/deep-rules
Ten Quick Tips for Deep Learning in Biology
Benjamin-Lee/CodonAdaptationIndex
Python Implementation of Codon Adaption Index
Benjamin-Lee/vdsearch
Viroid-like circRNA discovery and analysis suite
Benjamin-Lee/DNAvisualization.org
🧬📈 Turn DNA sequences into interactive visualizations
Benjamin-Lee/squiggle
📈 DNA Sequence Visualization for Humans
Benjamin-Lee/viroiddb
A curated database of all available viroid-like RNA sequences
Benjamin-Lee/circkit
High-performance circular sequence manipulation
Benjamin-Lee/cookiecutter-pandoc-paper
A Cookiecutter for writing papers in Markdown via Pandoc
Benjamin-Lee/riboviria.org
Source code for riboviria.org
Benjamin-Lee/congo
A simple, lightweight theme for Hugo built with Tailwind CSS.
Benjamin-Lee/branchpro
This is a one-week project in which we are using branching processes to estimate the time-dependent reproduction number of a disease.
Benjamin-Lee/contacts-app
A little Vue-based contacts app demo
Benjamin-Lee/cookiecutter
A command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, jQuery plugin projects.
Benjamin-Lee/dhall
A redirector for HUDS menus
Benjamin-Lee/dotfiles
Benjamin-Lee/electrum
Electrum Bitcoin Wallet
Benjamin-Lee/fire
🔥 Just a tiny tool for managing my money (and first learning Vue)
Benjamin-Lee/horcrux
Split your file into encrypted fragments so that you don't need to remember a passcode
Benjamin-Lee/ksw2
Global alignment and alignment extension
Benjamin-Lee/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
Benjamin-Lee/Nim
Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness, and elegance (in that order of priority).
Benjamin-Lee/nimeasyga
A friendly genetic algorithm library for Nim
Benjamin-Lee/oeb278-paper
Benjamin-Lee/plos
A PLOS template for Quarto
Benjamin-Lee/quarto-oxford-thesis
A Quarto template for Oxford DPhil theses
Benjamin-Lee/supabase
The open source Firebase alternative. Follow to stay updated about our public Beta.
Benjamin-Lee/textlint-rule-one-sentence-per-line
A fixable textlint rule to add a line break after each sentence
Benjamin-Lee/timestamp
A simple method of generating timestamps for my Zettelkasten
Benjamin-Lee/ve-sequence-parsers
Convert genbank, fasta, sbol to JSON and back again!
Benjamin-Lee/vue-plotly-1
📈 vue wrapper for plotly.js