Issue creating the conda environment
Closed this issue · 3 comments
Hello! When I run the line "conda env create -f BioAutoML-env.yml -n bioautoml", I receive the below message. Up to this point, the git cloning of the repo and other installation steps worked fine. Should I be using different versions of these problematic packages? Thanks so much for your help!
Collecting package metadata (repodata.json): done
Solving environment: failed
ResolvePackageNotFound:
- cryptography==36.0.0=py37h9ce1e76_0
- scipy==1.6.1=py37hf56f3a7_0
- xorg-renderproto==0.11.1=h14c3975_1002
- libxcb==1.13=h14c3975_1002
- setuptools==52.0.0=py37h06a4308_1
- pcre==8.44=he1b5a44_0
- xorg-xproto==7.0.31=h14c3975_1007
- xorg-libice==1.0.10=h516909a_0
- libopenblas==0.3.7=h5ec1e0e_6
- pysocks==1.7.1=py37h89c1867_4
- zlib==1.2.11=h36c2ea0_1013
- xorg-libxau==1.0.9=h14c3975_0
- libgcc-ng==9.1.0=hdf63c60_0
- bzip2==1.0.8=h516909a_3
- libxgboost==1.5.0=h295c915_1
- libuuid==2.32.1=h14c3975_1000
- xorg-libx11==1.6.12=h36c2ea0_0
- xorg-libxrender==0.9.10=h516909a_1002
- py-xgboost==1.5.0=py37h06a4308_1
- pixman==0.38.0=h516909a_1003
- xz==5.2.5=h516909a_1
- ncurses==6.2=h58526e2_4
- lightgbm==3.2.1=py37h295c915_0
- cairo==1.16.0=h3fc0475_1005
- glib==2.58.3=py37he00f558_1004
- icu==67.1=he1b5a44_0
- scikit-learn==1.0.1=py37h51133e4_0
- libgfortran4==7.5.0=h14aa051_19
- libgomp==9.3.0=h5101ec6_17
- xorg-libxdmcp==1.1.3=h516909a_0
- libffi==3.2.1=he1b5a44_1007
- pymongo==3.12.0=py37h295c915_0
- python==3.7.3=h5b0a415_0
- igraph==0.8.3=hef4adab_1
- pycairo==1.20.0=py37h01af8b0_1
- gmp==6.2.1=h58526e2_0
- xorg-xextproto==7.3.0=h14c3975_1002
- sqlite==3.33.0=h62c20be_0
- openssl==1.1.1l=h7f8727e_0
- pthread-stubs==0.4=h36c2ea0_1001
- certifi==2021.10.8=py37h89c1867_1
- cffi==1.15.0=py37h7f8727e_0
- deap==1.3.1=py37h9fdb41a_2
- fontconfig==2.13.1=h7e3eb15_1002
- libstdcxx-ng==9.1.0=hdf63c60_0
- libxml2==2.9.10=h68273f3_2
- future==0.18.2=py37h89c1867_4
- gettext==0.19.8.1=hf34092f_1004
- numpy==1.19.2=py37h7008fea_1
- python-igraph==0.8.3=py37h340e831_2
- libiconv==1.16=h516909a_0
- biopython==1.78=py37h4abf009_1
- libgfortran-ng==7.5.0=h14aa051_19
- xorg-kbproto==1.0.7=h14c3975_1002
- brotlipy==0.7.0=py37hb5d75c8_1001
- tk==8.6.10=h21135ba_1
- pandas==0.25.3=py37hb3f55d8_0
- libzlib==1.2.11=h36c2ea0_1013
- xorg-libxext==1.3.4=h516909a_0
- _openmp_mutex==4.5=1_gnu
- catboost==1.0.3=py37h89c1867_1
- readline==7.0=hf8c457e_1001
- freetype==2.10.4=h7ca028e_0
- ca-certificates==2021.10.26=h06a4308_2
- xorg-libsm==1.2.3=h84519dc_1000
- libedit==3.1.20191231=he28a2e2_2
- libpng==1.6.37=h21135ba_2
Dear jackievaleri,
We hope this email finds you well!
First, apologies for the delay, I was away due to personal issues.
What is your operating system? I did some testing, and it's working on debian/ubuntu!
Nevertheless, I pushed some updates. Could you try again?
Please feel free to reach out if you need anything.
Best regards,
Robson P Bonidia.
Hi Robson,
Thank you so much for your help. Unfortunately, when I tried again, I got very similar error messages. I am working on a M1 Mac running Monterey. My next step is trying this on an Ubuntu VM - thank you for the tip! I have included the errors below for your reference, but I will let you know my results in the Ubuntu test.
Thanks again!
-Jackie
`conda env create -f BioAutoML-env.yml -n bioautoml
Collecting package metadata (repodata.json): done
Solving environment: failed
ResolvePackageNotFound:
- pysocks==1.7.1=py37h89c1867_4
- libxml2==2.9.10=h68273f3_2
- readline==7.0=hf8c457e_1001
- xorg-xproto==7.0.31=h14c3975_1007
- brotlipy==0.7.0=py37hb5d75c8_1001
- future==0.18.2=py37h89c1867_4
- libuuid==2.32.1=h14c3975_1000
- xorg-libxau==1.0.9=h14c3975_0
- cairo==1.16.0=h3fc0475_1005
- python==3.7.3=h5b0a415_0
- xorg-libx11==1.6.12=h36c2ea0_0
- deap==1.3.1=py37h9fdb41a_2
- libedit==3.1.20191231=he28a2e2_2
- xorg-kbproto==1.0.7=h14c3975_1002
- libopenblas==0.3.7=h5ec1e0e_6
- libiconv==1.16=h516909a_0
- libpng==1.6.37=h21135ba_2
- certifi==2021.10.8=py37h89c1867_1
- libgomp==9.3.0=h5101ec6_17
- setuptools==52.0.0=py37h06a4308_1
- libgfortran4==7.5.0=h14aa051_19
- libxgboost==1.5.0=h295c915_1
- zlib==1.2.11=h36c2ea0_1013
- openssl==1.1.1o=h7f8727e_0
- libgcc-ng==9.1.0=hdf63c60_0
- scikit-learn==1.0.1=py37h51133e4_0
- xorg-libice==1.0.10=h516909a_0
- ca-certificates==2021.10.26=h06a4308_2
- libzlib==1.2.11=h36c2ea0_1013
- libgfortran-ng==7.5.0=h14aa051_19
- pycairo==1.20.0=py37h01af8b0_1
- py-xgboost==1.5.0=py37h06a4308_1
- ncurses==6.2=h58526e2_4
- xorg-libxext==1.3.4=h516909a_0
- sqlite==3.33.0=h62c20be_0
- _openmp_mutex==4.5=1_gnu
- xz==5.2.5=h516909a_1
- xorg-renderproto==0.11.1=h14c3975_1002
- pthread-stubs==0.4=h36c2ea0_1001
- pymongo==3.12.0=py37h295c915_0
- gettext==0.19.8.1=hf34092f_1004
- libxcb==1.13=h14c3975_1002
- cryptography==36.0.0=py37h9ce1e76_0
- xorg-libxrender==0.9.10=h516909a_1002
- biopython==1.78=py37h4abf009_1
- fontconfig==2.13.1=h7e3eb15_1002
- cffi==1.15.0=py37h7f8727e_0
- python-igraph==0.8.3=py37h340e831_2
- bzip2==1.0.8=h516909a_3
- freetype==2.10.4=h7ca028e_0
- libffi==3.2.1=he1b5a44_1007
- scipy==1.6.1=py37hf56f3a7_0
- pandas==0.25.3=py37hb3f55d8_0
- numpy==1.19.2=py37h7008fea_1
- gmp==6.2.1=h58526e2_0
- tk==8.6.10=h21135ba_1
- xorg-libxdmcp==1.1.3=h516909a_0
- pixman==0.38.0=h516909a_1003
- catboost==1.0.3=py37h89c1867_1
- igraph==0.8.3=hef4adab_1
- icu==67.1=he1b5a44_0
- libstdcxx-ng==9.1.0=hdf63c60_0
- xorg-libsm==1.2.3=h84519dc_1000
- xorg-xextproto==7.3.0=h14c3975_1002
- lightgbm==3.2.1=py37h295c915_0
- pcre==8.44=he1b5a44_0
- glib==2.58.3=py37he00f558_1004`
Creating the environment in Ubuntu 18.04 worked for me! Closing this issue - thank you for your help!