Notes: retrieve_readFromGitLab
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- Bash: start with or without access token
- If file, read from file
- If string, use string and message "you can also store the token and specify the path here"
- if empty, print message "only public ARCs will be searched"
- Bash: Store a list of all available projects (e.g. tab)
- Bash: for loop over project trees
- check for isa.investigation file
- present: download raw and dump to temp
- absent: leave loop
- check for isa.investigation file
- (Bash: unzip xlsx)
- (R: read xml of first sheet)