Brilator/arcFinder

Notes: retrieve_readFromGitLab

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  1. Bash: start with or without access token
    1. If file, read from file
    2. If string, use string and message "you can also store the token and specify the path here"
    3. if empty, print message "only public ARCs will be searched"
  2. Bash: Store a list of all available projects (e.g. tab)
  3. Bash: for loop over project trees
    1. check for isa.investigation file
      1. present: download raw and dump to temp
      2. absent: leave loop
  4. (Bash: unzip xlsx)
  5. (R: read xml of first sheet)