Report files missing when using MCR Linux CAT12 version
jhuguetn opened this issue · 11 comments
jhuguetn commented
At running the Segmentation module from the latest standalone release (12.9 r2556, see CAT12.9_R2017b_MCR_Linux.zip), CAT12 complains about missing some of the QC report output files. See trace below:
> cat_standalone.sh -b /opt/spm/standalone/cat_standalone_segment.m /data/sub-1_ses-01_T1w.nii.gz
...
Remove "/data/report/catreport_sub-1_ses-01_T1w.pdf" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
Remove "/data/report/catreportj_sub-1_ses-01_T1w.jpg" from dependency list because it does not exist!
One or multiple files do not exist and were removed from the dependency list
and following batches will may not work correctly!
03-Jun-2024 08:12:35 - Done 'CAT12: Segmentation'
03-Jun-2024 08:12:35 - Done
Bye for now...
Any ideas of what might be going on?
psadil commented
I'm noticing the same issue (with a different container). Would be happy to dig into this, but do you have any recommendations about troubleshooting? For example, is there a "verbose" option that could lead to a more helpful error log?