Run output diff script
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Jakob37 commented
When testing dev changes, typically a run is redone after the changes.
It would be greatly convenient to have a script which can be pointed to output folders before and after the change.
This script could then check for:
- Whether all files are there, or whether removed / added
- Whether they are the same size / md5sums (wherever expected)
- For VCF files
- If the header has changed (diff)
- If the number of records have changed
- What variants have been added / removed
- For BAM files
- (Possibly) samtools flagstat
- For the final YAML file
- The exact diff
- Whether all paths resolve