Pinned Repositories
actflowmapping
Data analysis code associated with Cole et al. (2016), Nature Neuroscience
ActflowToolbox
The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.
ColeAnticevicNetPartition
Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)
CombinedFC
Repository for Sanchez-Romero, R., & Cole, M. W. (2021). "Combining multiple functional connectivity methods to improve causal inferences". Journal of cognitive neuroscience, 33(2), 180-194. https://doi.org/10.1162/jocn_a_01580
controlCartography
Code for: "Flexible coordinator and switcher hubs for adaptive task control". Cocuzza et al., 2020 (In Press). Journal of Neuroscience.
hierarchy2020
code base for Ito T, Hearne LJ, Cole MW (2020). "A cortical hierarchy of localized and distributed processes revealed via dissociation of task activations, connectivity changes, and intrinsic timescales"
informationtransfermapping
Public code release for Ito, Kulkarni, Schultz, Mill, Chen, Solomyak, Cole (2017)
MultipleComparisonsPermutationTesting
Code to perform FWE-correction for multiple comparisons using permutation testing (see Nichols & Holmes, 2001)
simplesims
A simple simulation framework for testing brain functional connectivity methods
TaskFCRemoveMeanActivity
Code for running simulations and data analysis from: Cole MW, Ito T, Schultz D, Mill R, Chen R, Cocuzza C (2019). "Task activations produce spurious but systematic inflation of task functional connectivity estimates". NeuroImage. doi:10.1016/j.neuroimage.2018.12.054 https://authors.elsevier.com/a/1YNWs3lc~r3Jbx
Cole Neurocognition Laboratory's Repositories
ColeLab/ColeAnticevicNetPartition
Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)
ColeLab/ActflowToolbox
The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.
ColeLab/CombinedFC
Repository for Sanchez-Romero, R., & Cole, M. W. (2021). "Combining multiple functional connectivity methods to improve causal inferences". Journal of cognitive neuroscience, 33(2), 180-194. https://doi.org/10.1162/jocn_a_01580
ColeLab/TaskFCRemoveMeanActivity
Code for running simulations and data analysis from: Cole MW, Ito T, Schultz D, Mill R, Chen R, Cocuzza C (2019). "Task activations produce spurious but systematic inflation of task functional connectivity estimates". NeuroImage. doi:10.1016/j.neuroimage.2018.12.054 https://authors.elsevier.com/a/1YNWs3lc~r3Jbx
ColeLab/informationtransfermapping
Public code release for Ito, Kulkarni, Schultz, Mill, Chen, Solomyak, Cole (2017)
ColeLab/MultipleComparisonsPermutationTesting
Code to perform FWE-correction for multiple comparisons using permutation testing (see Nichols & Holmes, 2001)
ColeLab/actflowmapping
Data analysis code associated with Cole et al. (2016), Nature Neuroscience
ColeLab/hierarchy2020
code base for Ito T, Hearne LJ, Cole MW (2020). "A cortical hierarchy of localized and distributed processes revealed via dissociation of task activations, connectivity changes, and intrinsic timescales"
ColeLab/ClinicalActFlow_release
ColeLab/controlCartography
Code for: "Flexible coordinator and switcher hubs for adaptive task control". Cocuzza et al., 2020 (In Press). Journal of Neuroscience.
ColeLab/ReliableFC_release
ColeLab/simplesims
A simple simulation framework for testing brain functional connectivity methods
ColeLab/AgingActflow_release
Public code release for Mill, Gordon, Balota & Cole (2020): "Predicting dysfunctional age-related task activations from resting-state network alterations"
ColeLab/DynamicSensoryMotorEGI_release
ColeLab/LatentFC_release
Code release for McCormick et al. (2022): McCormick EM*, Arnemann KL*, Ito T, Hanson SJ, Cole MW (2022). "Latent functional connectivity underlying multiple brain states". Network Neuroscience; 6 (2): 570–590 doi:10.1162/netn_a_00234 [* = equal contribution]
ColeLab/TaskFCActflow_release
Code release for Cole et al. (2021) "The functional relevance of task-state functional connectivity", Journal of Neuroscience
ColeLab/CPRO2_learning_release
ColeLab/DirectedActflow_release
Repository for Sanchez-Romero, R., Ito, T., Mill, R. D., Hanson, S. J., & Cole, M. W. (2023). "Causally informed activity flow models provide mechanistic insight into network-generated cognitive activations". NeuroImage, 120300. https://doi.org/10.1016/j.neuroimage.2023.120300
ColeLab/ActFlowCategories
Publicly available code for "Distributed network processes account for the majority of variance in localized visual category selectivity", Cocuzza et al., 2022.
ColeLab/FlexHubMechanism
Publicly available code for "A flexible hub connectivity mechanism for cognitive control". Manuscript in-preparation. Part of C. Cocuzza's dissertation (Aim 3).
ColeLab/Motion_tACS_fMRI
Kar, Ito, Cole, Krekelberg - Collaboration with Krekelberg lab