CompEvol/BeastFX

Issues

• BEAST -validate should initialise and do a likelihood calculation

  #86 opened 18 days ago by rbouckaert
  0

• TreeAnnotator.MemoryFriendlyTreeSet cannot deal with Newick tree sets

  #85 opened 2 months ago by rbouckaert
  0

• LogCombiner 2.7.7: confusing naming of resampling input field

  #84 opened 3 months ago by tgvaughan
  4

• Inconsistent labelling of partitions in priors panel

  #57 opened a year ago by tgvaughan
  2

• BEAUtii Link/unlink of tree partitions can fail

  #83 opened 3 months ago by rbouckaert
  0

• TreeAnnotator set tree ID by method names

  #82 opened 3 months ago by walterxie
  0

• LogAnalyser can fail when log files is being written to

  #81 opened 8 months ago by rbouckaert
  0

• Drag/Drop alignments do not always work

  #72 opened 9 months ago by rbouckaert
  0

• Modularise TreeAnnotator

  #71 opened 9 months ago by rbouckaert
  1

• Make FastaImporter allow more flexible data types

  #59 opened 9 months ago by rbouckaert
  0

• Issue displaying alignment in BEAUti 2.7.4 on Windows

  #64 opened a year ago by laduplessis
  2

• LogAnalyser multithreading

  #80 opened 9 months ago by rbouckaert
  0

• BEAUti windows alignment viewer shows black screen

  #79 opened 10 months ago by rbouckaert
  0

• Importing alignments with .txt extension

  #78 opened 10 months ago by rbouckaert
  0

• AppLauncher app icons very big

  #75 opened 10 months ago by tgvaughan
  0

• AppLauncher app list detaches from top of window

  #76 opened 10 months ago by tgvaughan
  0

• Problems in LogCombiner 2.7.5.

  #74 opened a year ago by rbouckaert
  1

• Changing the colour of the validation label makes it invisible

  #70 opened a year ago by bjoelle
  3

• AppLauncher CLI cannot find icons

  #69 opened a year ago by rbouckaert
  0

• BEAUti cloning of clocks sometimes clones tree prior

  #34 opened 2 years ago by rbouckaert
  3

• Nested input editor doesn't scroll

  #68 opened a year ago by bjoelle
  1

• Selected theme not indicated in menu

  #67 opened a year ago by rbouckaert
  0

• Taxon set editor buttons don't display properly

  #61 opened a year ago by laduplessis
  1

• Ambiguous data type dialogue box doesn't always get focus

  #66 opened a year ago by laduplessis
  2

• Problems quitting BEAST 2.7.4 GUI on macOS

  #63 opened a year ago by laduplessis
  1

• HTML code in date parsing error message

  #65 opened a year ago by laduplessis
  0

• Prior preview x-axis rescaling buggy

  #62 opened a year ago by laduplessis
  0

• BEAUti 2.7.4 package manager buttons don't display

  #60 opened a year ago by laduplessis
  1

• Drag/drop alignment of partition panel in BEAUti

  #58 opened a year ago by rbouckaert
  0

• Linking paritions through comboboxes fails with STACEY template

  #56 opened a year ago by rbouckaert
  0

• FileListInputEditor should allow drag/drop of files

  #55 opened a year ago by rbouckaert
  0

• Estimate flag in BEAUti on parametric distribution parameters confusing

  #49 opened a year ago by rbouckaert
  0

• MRACPriorInputEditor not picking up the right taxon sets

  #50 opened a year ago by rbouckaert
  1

• LogCombiner GUI default file type

  #54 opened a year ago by rbouckaert
  0

• BEAUti should be able to switch from MCMC to other methods, e.g. MC3, nested sampling

  #53 opened a year ago by rbouckaert
  0

• Coalescent tree priors not showing options in BEAUti prior panel

  #48 opened a year ago by rbouckaert
  1

• Prior panel parametric distribution display

  #44 opened a year ago by rbouckaert
  0

• Tip dates operator not added/removed when `tipsonly` checked/unchecked in MRCAPrior

  #45 opened a year ago by rbouckaert
  0

• Link parameter GUI dialog problem

  #47 opened 2 years ago by walterxie
  1

• Guess date dialog

  #46 opened 2 years ago by walterxie
  0

• BeagleTreeLikelihood ignores rootFrequencies input

  #43 opened 2 years ago by rbouckaert
  0

• Enhance `-version_file` functionality

  #40 opened 2 years ago by rbouckaert
  0

• Generalise Node.getLength() implementation

  #42 opened 2 years ago by rbouckaert
  1

• LogCombiner GUI should pick up burn-in more robustly

  #41 opened 2 years ago by rbouckaert
  0

• Robustify cloning after reloading XML

  #39 opened 2 years ago by rbouckaert
  0

• Junit tests

  #36 opened 2 years ago by rbouckaert
  0

• BEAUti template polishing

  #35 opened 2 years ago by rbouckaert
  0

• -version_file option for BEAUti and other apps

  #33 opened 2 years ago by rbouckaert
  0

• BeautiPanelConfig does not draw Gene Ploidy panel properly

  #32 opened 2 years ago by walterxie
  0

• allowMultipleSelection is not used in getLoadFile

  #31 opened 2 years ago by walterxie
  0