9 analysis scripts confound multiple daughters with multiple generations
1fish2 opened this issue · 0 comments
1fish2 commented
Running:
DESC="2-gen" N_GENS=2 python runscripts/fw_queue.py
will queue up a 2-generation simulation including both daughter cells of the 2nd generation:
Queueing Variant 0
Queueing Seed 0
Queueing Gen 00.
Queueing Cell 0
Queueing Gen 01.
Queueing Cell 0
Queueing Cell 1
When running the fireworks, the following analysis scripts confound the multiple daughters with multiple generations, raising IndexError: index 2 is out of bounds for axis 0 with size 2
:
multigen/proteinAvgCountVsBurstSize.py: line 134, in do_plot
monomerExistMultigen[gen_idx,:] = monomerExist
multigen/proteinCountVsFoldChange.py: line 134, in do_plot
monomerExistMultigen[gen_idx,:] = monomerExist
multigen/proteinExistVsBurstSize.py: line 131, in do_plot
monomerExistMultigen[gen_idx,:] = monomerExist
multigen/proteinFoldChangeVsRnaDeg.py: line 131, in do_plot
ratioFinalToInitialCountMultigen[gen_idx,:] = ratioFinalToInitialCount
multigen/proteinFoldChangeVsTranscriptionEvents.py: line 128, in do_plot
ratioFinalToInitialCountMultigen[gen_idx,:] = ratioFinalToInitialCount
multigen/proteinFoldChangeVsTranslationEff.py: line 132, in do_plot
monomerExistMultigen[gen_idx,:] = monomerExist
multigen/proteinMassFractionFoldChange.py: line 150, in do_plot
monomerExistMultigen[gen_idx,:] = monomerExist
Queueing instead:
DESC="2-gen 2-sim" N_GENS=2 N_INIT_SIMS=2 python runscripts/fw_queue.py
will do likewise, and additionally the cohort analyses proteinCopyNumberDistribution
and rnaCopyNumberDistribution
will raise the IndexError
exception. Those analyses only run for simulations with multiple seeds.