DRL/blobtools

Issues

• no-hit 80%

  #135 opened a month ago by Ofsm
  0

• conda installation instructions don't work

  #134 opened 3 months ago by mw55309
  13

• Parsing Mapping file getting Killed

  #133 opened 5 months ago by migueldc1
  1

• TaxID mapping file_question

  #132 opened 7 months ago by LadaJov
  0

• unmapped vs mapped in covplot

  #117 opened 3 years ago by shoyosato
  6

• Cannot download taxonomy data - permission denied

  #131 opened 10 months ago by DIPLOMICS-SA
  0

• megablast taxonomy assign

  #130 opened a year ago by ykkim0127
  0

• IndexError: list index out of range when parsing tax0. Blobtools normally works, not sure how to troubleshoot this error

  #129 opened a year ago by margaretc-ho
  1

• docker build failing

  #123 opened 2 years ago by ekg
  3

• Can this software now check the sequencing contamination of fungi and other Eukaryote?

  #128 opened a year ago by maruiqi0710
  0

• DocoptExit ImportError: No module named docopt

  #127 opened a year ago by Gon1976
  3

• Bamfilter outputting .fa instead of .fq

  #99 opened 5 years ago by theo-llewellyn
  3

• blobtools bamfilter arguments

  #113 opened 4 years ago by tomwells-oxf
  1

• Blobtools fail to calculate GC, coverage

  #126 opened 2 years ago by margaretc-ho
  8

• Problems with BlobToolKit Viewer

  #125 opened 2 years ago by ejourdai
  1

• conda install has faulty blobtools plot

  #122 opened 2 years ago by sarjopp
  0

• Tip: some jq code to get list of "good" contigs

  #121 opened 2 years ago by kdm9
  0

• add an output options to the nodesdb tools

  #120 opened 3 years ago by ArthurPERE
  3

• Pysam installation failure with conda environment

  #98 opened 5 years ago
  2

• Thanks to the developers for the program

  #119 opened 3 years ago by SergeyBaikal
  0

• nodesdb not generated

  #115 opened 4 years ago by ccgallen
  2

• error in blobtools create

  #118 opened 3 years ago by angusdavison
  0

• ModuleNotFoundError: No module named 'docopt'

  #116 opened 3 years ago by RahmatpourNasim
  2

• blobtools create tool error

  #92 opened 5 years ago by XClaws
  3

• AttributeError: 'ParsedRequirement' object has no attribute 'req'

  #114 opened 4 years ago by Jigyasa3
  0

• Blobtools for symbiosis

  #90 opened 5 years ago by Sandrine3
  2

• blobtools didn't work with nt hits

  #111 opened 4 years ago by wqhf
  0

• GC content is 0

  #110 opened 4 years ago by ginac
  3

• blobtools Create doing nothing

  #109 opened 4 years ago by Rob-murphys
  17

• Problems with Y axis in plots with rank species

  #108 opened 4 years ago by gitcruz
  0

• Why use assembled genomes vs raw reads in example workflow 1

  #107 opened 4 years ago by Rob-murphys
  4

• ambiguous bamfilter option

  #100 opened 4 years ago by katieemelianova
  1

• Empty dataset

  #102 opened 4 years ago by demolnau
  1

• taxify "IndexError: list index out of range"

  #103 opened 4 years ago by Jigyasa3
  1

• list object has no attribute values

  #105 opened 4 years ago by demolnau
  1

• CONCOCT

  #106 opened 4 years ago by sarah872
  1

• python defaulting to wrong version during installation

  #104 opened 4 years ago by sjfleck
  1

• Can't parse BAM files

  #101 opened 4 years ago by Mpersicae
  3

• no .json file produced by blobtools create

  #97 opened 5 years ago by peterthorpe5
  1

• Error in matching of headers in FASTA and BAM

  #96 opened 5 years ago by jotech
  2

• the output plot is empty

  #94 opened 5 years ago by XClaws
  4

• error reading bamfile

  #91 opened 5 years ago by jotech
  1

• taxify MemoryError

  #89 opened 5 years ago by Yulia-Yakovleva
  1

• error in uniprot parallel download

  #87 opened 5 years ago by raw937
  1

• blobtools create: [ERROR:27] nodesDB ("--db") could not be read

  #95 opened 5 years ago by etvedte
  1

• undef phylum

  #93 opened 5 years ago by XClaws
  3

• PySam issue

  #88 opened 6 years ago by francoissabot
  5

• ValueError: Invalid RGBA argument: '#' when assigning HEX color to phyla

  #86 opened 6 years ago by anhdha
  3

• python3

  #81 opened 6 years ago by colindaven
  3

• Pip >=10 Compatability

  #80 opened 6 years ago by ignacio3437
  2