Pinned Repositories
blobtools
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
blobtools-light
Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!
blobtools_manuscript
Data for the BlobTools manuscript
blocktools
bSFS-based analysis toolkit
egg_hunt
Burrowing beetle image processing
kinfin
Taxon-aware analysis of clustered protein sequences
kinfin_manuscript
Data for the KinFin manuscript
SMBE-SGE-2019
Material for SMBE-SGE-2019 workshop
snpgenie
Perl software for estimating evolutionary parameters from pooled next-generation sequencing SNP data
gIMble
A genome-wide IM blockwise likelihood estimation toolkit
DRL's Repositories
DRL/egg_hunt
Burrowing beetle image processing
DRL/fastats
Fasta statistics
DRL/Laetsch2010
The Anguillicolidae (Nematoda: Anguillicoloidea): Barcoding, population structures and phylogenetics
DRL/acc2fasta
Perl script that takes in a list of accession numbers (TXT, CSV) and fetches the fasta files from genbank
DRL/anisakis
DRL/blast4tagc_experiment
testing different algorithms for tagc
DRL/exonerate_gff_to_fasta
DRL/find_proteins_in_genomes
Finding effectors in genomes based on tblastn output
DRL/gff_scripts
Scripts for dealing with GFF files
DRL/hox
DRL/kmer
DRL/map2ref_tools
DRL/mask_blastdb_by_taxid
Python script for making subsets of blastdbs based on a list of taxids
DRL/misc
DRL/pipe2histo
DRL/ppx_wrapper
DRL/ros_annotation_qc
DRL/scmt
DRL/scripts
Several scripts for several tasks
DRL/syntenythyzer
.
DRL/twin_peaks
DRL/unique_contigs_in_blast_at_eval
counts number of contigs that hit something at different eval cutoffs and outputs it in tab format