Traceback inaccurate with gap open costs

Question

Traceback inaccurate with gap open costs

Daniel-Liu-c0deb0t opened this issue 2 years ago · 1 comments

Daniel-Liu-c0deb0t commented 2 years ago

Need to keep track of traceback for the gap matrices (whether continuing or opening a gap). Currently, following gap transitions just end up on an entry in the dp matrix (not the gap matrices) even if its continuing a gap.

Answer 1 · 2023-01-28T10:42:55.000Z

As an example, when aligning AC and AACC with cost model (sub=1, open=1, extend=1), triple_accel correctly returns cost 3, but the cigar is X=X= instead of =XX=.