Error in dynamic path visualization when following tutorial:
Opened this issue · 4 comments
dansenglund commented
I was following the example from the quickstart and got the following error:
>plot(carp_fit, type = "dynamic_path")
nframes and fps adjusted to match transition
geom_path: Each group consists of only one observation. Do you need to adjust the group aesthetic?
geom_path: Each group consists of only one observation. Do you need to adjust the group aesthetic?
Error in magick::image_animate(anim, fps, loop = if (loop) 0 else 1) :
argument 'fps' must be a factor of 100
[Edited by MW: Added triple-backticks for code formatting]
I don't know if this is an issue of my local configuration, but I thought I should mention it
michaelweylandt commented
Not a problem with you specifically. This is a weird bug I've been trying to track down for a while but can't get a handle on. It's somewhere in the GIF rendering stack, because we never set an fps argument anywhere.
Totally random guess: does print(plot(carp_fit, type = "dynamic_path"), fps = 50) help?
dansenglund commented
Same error
michaelweylandt commented
Crud. That's supposed to be how fps gets set. I have a sneaking suspicion that this isn't really a problem with fps but is lower down in ImageMagick / R bindings and getting propagated up weirdly. We'll have to make this a long-term TODO.
Can you copy and paste the output of
options(width = 100); print(sessioninfo::session_info("clustRviz"))
here for future debugging purposes?
dansenglund commented
>options(width = 100); print(sessioninfo::session_info("clustRviz"))
─ Session info ───────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.0.0 (2020-04-24)
os macOS Catalina 10.15.4
system x86_64, darwin17.0
ui RStudio
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz America/New_York
date 2020-05-12
─ Packages ───────────────────────────────────────────────────────────────────────────────────────
package * version date lib source
animation 2.6 2018-12-11 [1] CRAN (R 4.0.0)
askpass 1.1 2019-01-13 [1] CRAN (R 4.0.0)
assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.0.0)
backports 1.1.6 2020-04-05 [1] CRAN (R 4.0.0)
base64enc 0.1-3 2015-07-28 [1] CRAN (R 4.0.0)
BH 1.72.0-3 2020-01-08 [1] CRAN (R 4.0.0)
bitops 1.0-6 2013-08-17 [1] CRAN (R 4.0.0)
callr 3.4.3 2020-03-28 [1] CRAN (R 4.0.0)
caTools 1.18.0 2020-01-17 [1] CRAN (R 4.0.0)
cli 2.0.2 2020-02-28 [1] CRAN (R 4.0.0)
cluster 2.1.0 2019-06-19 [1] CRAN (R 4.0.0)
clustRviz * 0.1.0 2020-05-12 [1] local
codetools 0.2-16 2018-12-24 [1] CRAN (R 4.0.0)
colorspace 1.4-1 2019-03-18 [1] CRAN (R 4.0.0)
crayon 1.3.4 2017-09-16 [1] CRAN (R 4.0.0)
crosstalk 1.1.0.1 2020-03-13 [1] CRAN (R 4.0.0)
curl 4.3 2019-12-02 [1] CRAN (R 4.0.0)
data.table 1.12.8 2019-12-09 [1] CRAN (R 4.0.0)
dendextend 1.13.4 2020-02-28 [1] CRAN (R 4.0.0)
desc 1.2.0 2018-05-01 [1] CRAN (R 4.0.0)
digest 0.6.25 2020-02-23 [1] CRAN (R 4.0.0)
dplyr 0.8.5 2020-03-07 [1] CRAN (R 4.0.0)
egg 0.4.5 2019-07-13 [1] CRAN (R 4.0.0)
ellipsis 0.3.0 2019-09-20 [1] CRAN (R 4.0.0)
evaluate 0.14 2019-05-28 [1] CRAN (R 4.0.0)
fansi 0.4.1 2020-01-08 [1] CRAN (R 4.0.0)
farver 2.0.3 2020-01-16 [1] CRAN (R 4.0.0)
fastmap 1.0.1 2019-10-08 [1] CRAN (R 4.0.0)
foreach 1.5.0 2020-03-30 [1] CRAN (R 4.0.0)
gclus 1.3.2 2019-01-07 [1] CRAN (R 4.0.0)
gdata 2.18.0 2017-06-06 [1] CRAN (R 4.0.0)
gganimate 1.0.5 2020-02-09 [1] CRAN (R 4.0.0)
ggplot2 3.3.0 2020-03-05 [1] CRAN (R 4.0.0)
ggrepel 0.8.2 2020-03-08 [1] CRAN (R 4.0.0)
glue 1.4.0 2020-04-03 [1] CRAN (R 4.0.0)
gplots 3.0.3 2020-02-25 [1] CRAN (R 4.0.0)
gridExtra 2.3 2017-09-09 [1] CRAN (R 4.0.0)
gtable 0.3.0 2019-03-25 [1] CRAN (R 4.0.0)
gtools 3.8.2 2020-03-31 [1] CRAN (R 4.0.0)
heatmaply 1.1.0 2020-03-28 [1] CRAN (R 4.0.0)
hexbin 1.28.1 2020-02-03 [1] CRAN (R 4.0.0)
hms 0.5.3 2020-01-08 [1] CRAN (R 4.0.0)
htmltools 0.4.0 2019-10-04 [1] CRAN (R 4.0.0)
htmlwidgets 1.5.1 2019-10-08 [1] CRAN (R 4.0.0)
httpuv 1.5.2 2019-09-11 [1] CRAN (R 4.0.0)
httr 1.4.1 2019-08-05 [1] CRAN (R 4.0.0)
isoband 0.2.1 2020-04-12 [1] CRAN (R 4.0.0)
iterators 1.0.12 2019-07-26 [1] CRAN (R 4.0.0)
jsonlite 1.6.1 2020-02-02 [1] CRAN (R 4.0.0)
KernSmooth 2.23-16 2019-10-15 [1] CRAN (R 4.0.0)
labeling 0.3 2014-08-23 [1] CRAN (R 4.0.0)
later 1.0.0 2019-10-04 [1] CRAN (R 4.0.0)
lattice 0.20-41 2020-04-02 [1] CRAN (R 4.0.0)
lazyeval 0.2.2 2019-03-15 [1] CRAN (R 4.0.0)
lifecycle 0.2.0 2020-03-06 [1] CRAN (R 4.0.0)
magick 2.3 2020-01-24 [1] CRAN (R 4.0.0)
magrittr 1.5 2014-11-22 [1] CRAN (R 4.0.0)
MASS 7.3-51.5 2019-12-20 [1] CRAN (R 4.0.0)
Matrix 1.2-18 2019-11-27 [1] CRAN (R 4.0.0)
mgcv 1.8-31 2019-11-09 [1] CRAN (R 4.0.0)
mime 0.9 2020-02-04 [1] CRAN (R 4.0.0)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.0.0)
nlme 3.1-147 2020-04-13 [1] CRAN (R 4.0.0)
openssl 1.4.1 2019-07-18 [1] CRAN (R 4.0.0)
pillar 1.4.4 2020-05-05 [1] CRAN (R 4.0.0)
pkgbuild 1.0.8 2020-05-07 [1] CRAN (R 4.0.0)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.0.0)
pkgload 1.0.2 2018-10-29 [1] CRAN (R 4.0.0)
plogr 0.2.0 2018-03-25 [1] CRAN (R 4.0.0)
plotly 4.9.2.1 2020-04-04 [1] CRAN (R 4.0.0)
plyr 1.8.6 2020-03-03 [1] CRAN (R 4.0.0)
praise 1.0.0 2015-08-11 [1] CRAN (R 4.0.0)
prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.0.0)
processx 3.4.2 2020-02-09 [1] CRAN (R 4.0.0)
progress 1.2.2 2019-05-16 [1] CRAN (R 4.0.0)
promises 1.1.0 2019-10-04 [1] CRAN (R 4.0.0)
ps 1.3.3 2020-05-08 [1] CRAN (R 4.0.0)
purrr 0.3.4 2020-04-17 [1] CRAN (R 4.0.0)
qap 0.1-1 2017-02-27 [1] CRAN (R 4.0.0)
R6 2.4.1 2019-11-12 [1] CRAN (R 4.0.0)
RColorBrewer 1.1-2 2014-12-07 [1] CRAN (R 4.0.0)
Rcpp 1.0.4.6 2020-04-09 [1] CRAN (R 4.0.0)
RcppEigen 0.3.3.7.0 2019-11-16 [1] CRAN (R 4.0.0)
registry 0.5-1 2019-03-05 [1] CRAN (R 4.0.0)
reshape2 1.4.4 2020-04-09 [1] CRAN (R 4.0.0)
rlang 0.4.6 2020-05-02 [1] CRAN (R 4.0.0)
rprojroot 1.3-2 2018-01-03 [1] CRAN (R 4.0.0)
rstudioapi 0.11 2020-02-07 [1] CRAN (R 4.0.0)
scales 1.1.1 2020-05-11 [1] CRAN (R 4.0.0)
seriation 1.2-8 2019-08-27 [1] CRAN (R 4.0.0)
shiny 1.4.0.2 2020-03-13 [1] CRAN (R 4.0.0)
sourcetools 0.1.7 2018-04-25 [1] CRAN (R 4.0.0)
stringi 1.4.6 2020-02-17 [1] CRAN (R 4.0.0)
stringr 1.4.0 2019-02-10 [1] CRAN (R 4.0.0)
sys 3.3 2019-08-21 [1] CRAN (R 4.0.0)
testthat 2.3.2 2020-03-02 [1] CRAN (R 4.0.0)
tibble 3.0.1 2020-04-20 [1] CRAN (R 4.0.0)
tidyr 1.0.3 2020-05-07 [1] CRAN (R 4.0.0)
tidyselect 1.1.0 2020-05-11 [1] CRAN (R 4.0.0)
TSP 1.1-10 2020-04-17 [1] CRAN (R 4.0.0)
tweenr 1.0.1 2018-12-14 [1] CRAN (R 4.0.0)
utf8 1.1.4 2018-05-24 [1] CRAN (R 4.0.0)
vctrs 0.3.0 2020-05-11 [1] CRAN (R 4.0.0)
viridis 0.5.1 2018-03-29 [1] CRAN (R 4.0.0)
viridisLite 0.3.0 2018-02-01 [1] CRAN (R 4.0.0)
webshot 0.5.2 2019-11-22 [1] CRAN (R 4.0.0)
withr 2.2.0 2020-04-20 [1] CRAN (R 4.0.0)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.0.0)
yaml 2.2.1 2020-02-01 [1] CRAN (R 4.0.0)
zoo 1.8-8 2020-05-02 [1] CRAN (R 4.0.0)
[1] /Library/Frameworks/R.framework/Versions/4.0/Resources/library