Error running bin/create-mapping production.ini --app-name app/AWS question

Question

Error running bin/create-mapping production.ini --app-name app/AWS question

skotechaeng opened this issue 5 years ago · 20 comments

One more issue. I get the error below when running: bin/create-mapping production.ini --app-name app

I am running this on Azure and I have some questions. Is there any data that is being pulled out of S3 buckets or are there files as part of the build that create the index etc. Would love any ideas on what I need to change to run this on Azure/on-prem. Appreciate any help.

Traceback (most recent call last):
File "bin/create-mapping", line 103, in
sys.exit(snovault.elasticsearch.create_mapping.main())
File "/home/encoded/encoded/develop/snovault/src/snovault/elasticsearch/create_mapping.py", line 534, in main
app = get_app(args.config_uri, args.app_name)
File "/home/encoded/encoded/eggs/pyramid-1.6a2-py3.4.egg/pyramid/paster.py", line 31, in get_app
global_conf=options)
File "/home/encoded/encoded/eggs/PasteDeploy-1.5.2-py3.4.egg/paste/deploy/loadwsgi.py", line 247, in loadapp
return loadobj(APP, uri, name=name, **kw)
File "/home/encoded/encoded/eggs/PasteDeploy-1.5.2-py3.4.egg/paste/deploy/loadwsgi.py", line 272, in loadobj
return context.create()
File "/home/encoded/encoded/eggs/PasteDeploy-1.5.2-py3.4.egg/paste/deploy/loadwsgi.py", line 710, in create
return self.object_type.invoke(self)
File "/home/encoded/encoded/eggs/PasteDeploy-1.5.2-py3.4.egg/paste/deploy/loadwsgi.py", line 146, in invoke
return fix_call(context.object, context.global_conf, **context.local_conf)
File "/home/encoded/encoded/eggs/PasteDeploy-1.5.2-py3.4.egg/paste/deploy/util.py", line 55, in fix_call
val = callable(*args, **kw)
File "/home/encoded/encoded/src/encoded/init.py", line 217, in main
config.include('snovault')
File "/home/encoded/encoded/eggs/pyramid-1.6a2-py3.4.egg/pyramid/config/init.py", line 798, in include
c(configurator)
File "/home/encoded/encoded/develop/snovault/src/snovault/init.py", line 60, in includeme
config.include('.storage')
File "/home/encoded/encoded/eggs/pyramid-1.6a2-py3.4.egg/pyramid/config/init.py", line 798, in include
c(configurator)
File "/home/encoded/encoded/develop/snovault/src/snovault/storage.py", line 54, in includeme
store_profile_name=registry.settings.get('blob_store_profile_name')
File "/home/encoded/encoded/develop/snovault/src/snovault/storage.py", line 303, in init
self.store_conn = boto3.Session(profile_name=store_profile_name).client('s3')
File "/home/encoded/encoded/eggs/boto3-1.7.30-py3.4.egg/boto3/session.py", line 80, in init
self._setup_loader()
File "/home/encoded/encoded/eggs/boto3-1.7.30-py3.4.egg/boto3/session.py", line 120, in _setup_loader
self._loader = self._session.get_component('data_loader')
File "/home/encoded/encoded/eggs/botocore-1.10.30-py3.4.egg/botocore/session.py", line 726, in get_component
return self._components.get_component(name)
File "/home/encoded/encoded/eggs/botocore-1.10.30-py3.4.egg/botocore/session.py", line 922, in get_component
self._components[name] = factory()
File "/home/encoded/encoded/eggs/botocore-1.10.30-py3.4.egg/botocore/session.py", line 184, in
lambda: create_loader(self.get_config_variable('data_path')))
File "/home/encoded/encoded/eggs/botocore-1.10.30-py3.4.egg/botocore/session.py", line 279, in get_config_variable
elif self._found_in_config_file(methods, var_config):
File "/home/encoded/encoded/eggs/botocore-1.10.30-py3.4.egg/botocore/session.py", line 306, in _found_in_config_file
return var_config[0] in self.get_scoped_config()
File "/home/encoded/encoded/eggs/botocore-1.10.30-py3.4.egg/botocore/session.py", line 383, in get_scoped_config
raise ProfileNotFound(profile=profile_name)
botocore.exceptions.ProfileNotFound: The config profile (encoded-files-upload) could not be found

Answer 1 · 2020-01-06T01:01:21.000Z

Yes, I don't think this is supported for external users, as it would load production data (some of which is private) into Elasticsearch. The specific error above is complaining about not having the right AWS keys:

botocore.exceptions.ProfileNotFound: The config profile (encoded-files-upload) could not be found

I think the best you can do here is run dev servers, which loads fake data from local file:

bin/dev-servers development.ini --app-name app --clear --init --load
bin/pserve development.ini

Answer 2 · 2020-01-06T01:13:36.000Z

Thanks so much Keenan. I had tried that to avoid the AWS keys issue and got the following. Postgres issue of some type. Is there something I need to change in an ini file?

Traceback (most recent call last):
File "bin/dev-servers", line 103, in
sys.exit(snovault.dev_servers.main())
File "/home/encoded/encoded/develop/snovault/src/snovault/dev_servers.py", line 79, in main
postgresql_fixture.initdb(pgdata, echo=True)
File "/home/encoded/encoded/develop/snovault/src/snovault/tests/postgresql_fixture.py", line 20, in initdb
stderr=subprocess.STDOUT,
File "/usr/lib/python3.4/subprocess.py", line 607, in check_output
with Popen(*popenargs, stdout=PIPE, **kwargs) as process:
File "/usr/lib/python3.4/subprocess.py", line 859, in init
restore_signals, start_new_session)
File "/usr/lib/python3.4/subprocess.py", line 1457, in _execute_child
raise child_exception_type(errno_num, err_msg)
FileNotFoundError: [Errno 2] No such file or directory: 'initdb'

Answer 3 · 2020-01-06T14:59:36.000Z

FileNotFoundError: [Errno 2] No such file or directory: 'initdb'

You might want to try and set your own --datadir. Looks like it's trying to use this tmp directory and not finding it: https://github.com/ENCODE-DCC/snovault/blob/f92ae8eeeebc811cf8cc81665d5d8a7c53c2af4f/src/snovault/dev_servers.py#L62

Not sure if this is a problem with the buildout or running on Azure.

Answer 4 · 2020-01-06T15:35:23.000Z

Thanks. That might be it. I will try that.

Answer 5 · 2020-01-06T17:01:38.000Z

Hi @skotechaeng - not sure we've met but if you are interested in using encoded in production I can invite you to our collaborations slack channel. Send me an email at hitz@stanford.edu.

Answer 6 · 2020-01-08T17:24:25.000Z

I changed --datadit and still no luck. It may be an issue with postgres? When I see this: File "/home/encoded/encoded/develop/snovault/src/snovault/dev_servers.py", line 79, in main
postgresql_fixture.initdb(pgdata, echo=True) it seems there may be an issue with initdb, which does not come with postgres but an postgres cluster creation too called postgres-xc. Appreciate any other thoughts on this.

Answer 7 · 2020-01-08T17:58:24.000Z

Are you using a default postgres install for ubuntu? I think you might need to apt get the following:

daemontools
postgresql
postgresql-contrib

Should work with pg11.

Answer 8 · 2020-01-08T18:01:28.000Z

Made progress; I set the following path for the pg binaries and the database got created:

export PATH=$PATH:/usr/lib/postgresql/9.3/bin

I have an Elastic issue now but I bet it has something to do with the path :-). Will keep hacking at it.

bin/dev-servers development.ini --app-name app --init --clear
The files belonging to this database system will be owned by user "encoded".
This user must also own the server process.

The database cluster will be initialized with locale "en_US.UTF-8".
The default database encoding has accordingly been set to "UTF8".
The default text search configuration will be set to "english".

Data page checksums are disabled.

creating directory /tmp/snovault/pgdata ... ok
creating subdirectories ... ok
selecting default max_connections ... 100
selecting default shared_buffers ... 128MB
creating configuration files ... ok
creating template1 database in /tmp/snovault/pgdata/base/1 ... ok
initializing pg_authid ... ok
initializing dependencies ... ok
creating system views ... ok
loading system objects' descriptions ... ok
creating collations ... ok
creating conversions ... ok
creating dictionaries ... ok
setting privileges on built-in objects ... ok
creating information schema ... ok
loading PL/pgSQL server-side language ... ok
vacuuming database template1 ... ok
copying template1 to template0 ... ok
copying template1 to postgres ... ok
syncing data to disk ... ok

Success. You can now start the database server using:

postgres -D /tmp/snovault/pgdata

or
pg_ctl -D /tmp/snovault/pgdata -l logfile start

LOG: database system was shut down at 2020-01-08 17:56:01 UTC
LOG: MultiXact member wraparound protections are now enabled
LOG: autovacuum launcher started
LOG: database system is ready to accept connections
Created: postgresql://postgres@:5432/postgres?host=/tmp/snovault/pgdata
NOT IN TRAVIS
['elasticsearch', '-Enetwork.host=127.0.0.1', '-Ehttp.port=9201', '-Epath.data=/tmp/snovault/esdata/data', '-Epath.logs=/tmp/snovault/esdata/logs', '-Epath.conf=./conf']
Traceback (most recent call last):
File "bin/dev-servers", line 103, in
sys.exit(snovault.dev_servers.main())
File "/home/encoded/encoded/develop/snovault/src/snovault/dev_servers.py", line 82, in main
elasticsearch = elasticsearch_fixture.server_process(esdata, echo=True)
File "/home/encoded/encoded/develop/snovault/src/snovault/tests/elasticsearch_fixture.py", line 30, in server_process
stderr=subprocess.STDOUT,
File "/usr/lib/python3.4/subprocess.py", line 859, in init
restore_signals, start_new_session)
File "/usr/lib/python3.4/subprocess.py", line 1457, in _execute_child
raise child_exception_type(errno_num, err_msg)
FileNotFoundError: [Errno 2] No such file or directory: 'elasticsearch'
encoded@datanav-demo:~/encoded$ cd /tmp/snovault/pgdata

Answer 9 · 2020-01-08T20:06:47.000Z

How did you install elasticsearch? Which version and is it in your path?

Answer 10 · 2020-01-08T21:36:13.000Z

I installed 5.6.3 and looks like I am all set on the path. Looks like I have something working. I have kicked of bin/dev-servers development.ini --app-name app --clear --init --load

I should run bin/pserve development.ini after the first step is done correct?

I might still run into issue but I have gotten past a lot of the major hurdles - Thanks Ben and Keenan. I will close the issue once I have the app fully running. Besides the ideas you guys gave me, I found a number of things I have to do to make this run on Azure without using scripts.

Answer 11 · 2020-01-08T21:44:09.000Z

yeah that is the next step.

Answer 12 · 2020-01-09T17:30:57.000Z

I know the production indexing process takes a while. What about development? The index creation starts and then freezes. I changed the JVM heap settings to 8g mix and max.

Answer 13 · 2020-01-09T19:24:04.000Z

shouldn't take more than a few minutes. Likely it freezing is an ES issue. I have been having some trouble myself on my new mac. I think it doesn't always find our specific elasticsearch configs.

Answer 14 · 2020-01-09T19:29:01.000Z

Thanks. I am getting the following. Doesn't like like anything is happening. Yeah seems like an ES. I will keep working on it. Also when do the tables in postgres get created? Does it create a database called encoded?

[2020-01-09T17:38:11,694][INFO ][o.e.c.m.MetaDataMappingService] [bT_vsYL] [filtering_quality_metric/_H-tRMttQSGF6iLRaNFzCA] create_mapping [filtering_quality_metric]
[2020-01-09T17:38:11,727][INFO ][o.e.c.m.MetaDataCreateIndexService] [bT_vsYL] [analysis_step] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T17:38:12,078][INFO ][o.e.c.m.MetaDataMappingService] [bT_vsYL] [analysis_step/4F4xIk_wQa2pPMPr-Db9tg] create_mapping [analysis_step]
[2020-01-09T17:49:20,619][INFO ][o.e.c.m.MetaDataMappingService] [bT_vsYL] [snovault/Hbryl39uQWqpu0xz0hrA5A] update_mapping [meta]
[2020-01-09T17:49:22,278][INFO ][o.e.c.m.MetaDataMappingService] [bT_vsYL] [snovault/Hbryl39uQWqpu0xz0hrA5A] update_mapping [meta]
[2020-01-09T17:54:08,022][INFO ][o.e.m.j.JvmGcMonitorService] [bT_vsYL] [gc][1001] overhead, spent [314ms] collecting in the last [1s]

Answer 15 · 2020-01-09T19:30:32.000Z

this is when you run dev-servers command? Did you run the tests?

Answer 16 · 2020-01-09T19:47:35.000Z

Yes this is when I run dev-servers. dev-servers does not finish and gets stuck here.

Answer 17 · 2020-01-09T20:13:48.000Z

It should "hang" because the databases are waiting to be connected to.
You can check ES from another window by something like:
>curl localhost:9201
It shouldn't be garbage collecting (GC) but that is something that ES does...

My output is:

`bin/dev-servers development.ini --app-name app --clear --init --load
The files belonging to this database system will be owned by user "hitz".
This user must also own the server process.

The database cluster will be initialized with locale "en_US.UTF-8".
The default database encoding has accordingly been set to "UTF8".
The default text search configuration will be set to "english".

Data page checksums are disabled.

creating directory /tmp/snovault/pgdata ... ok
creating subdirectories ... ok
selecting default max_connections ... 100
selecting default shared_buffers ... 128MB
selecting default timezone ... America/Los_Angeles
selecting dynamic shared memory implementation ... posix
creating configuration files ... ok
running bootstrap script ... ok
performing post-bootstrap initialization ... ok
syncing data to disk ... ok

Success. You can now start the database server using:

    pg_ctl -D /tmp/snovault/pgdata -l logfile start


2020-01-09 11:30:25.079 PST [30256] LOG:  listening on Unix socket "/tmp/snovault/pgdata/.s.PGSQL.5432"
2020-01-09 11:30:25.089 PST [30257] LOG:  database system was shut down at 2020-01-09 11:30:25 PST
2020-01-09 11:30:25.092 PST [30256] LOG:  database system is ready to accept connections
Created: postgresql://postgres@:5432/postgres?host=/tmp/snovault/pgdata
NOT IN TRAVIS
['elasticsearch', '-Enetwork.host=127.0.0.1', '-Ehttp.port=9201', '-Epath.data=/tmp/snovault/esdata/data', '-Epath.logs=/tmp/snovault/esdata/logs', '-Epath.conf=./conf']
[2020-01-09T11:30:27,000][INFO ][o.e.n.Node               ] [] initializing ...
[2020-01-09T11:30:27,090][INFO ][o.e.e.NodeEnvironment    ] [Kho6DoB] using [1] data paths, mounts [[/System/Volumes/Data (/dev/disk1s2)]], net usable_space [594.9gb], net total_space [931.5gb], spins? [unknown], types [apfs]
[2020-01-09T11:30:27,090][INFO ][o.e.e.NodeEnvironment    ] [Kho6DoB] heap size [1.9gb], compressed ordinary object pointers [true]
[2020-01-09T11:30:27,092][INFO ][o.e.n.Node               ] node name [Kho6DoB] derived from node ID [Kho6DoBCR9CJe1cI8LaVoQ]; set [node.name] to override
[2020-01-09T11:30:27,092][INFO ][o.e.n.Node               ] version[5.6.16], pid[30264], build[3a740d1/2019-03-13T15:33:36.565Z], OS[Mac OS X/10.15.2/x86_64], JVM[AdoptOpenJDK/OpenJDK 64-Bit Server VM/1.8.0_232/25.232-b09]
[2020-01-09T11:30:27,092][INFO ][o.e.n.Node               ] JVM arguments [-Xms2g, -Xmx2g, -XX:+UseConcMarkSweepGC, -XX:CMSInitiatingOccupancyFraction=75, -XX:+UseCMSInitiatingOccupancyOnly, -XX:+AlwaysPreTouch, -Xss1m, -Djava.awt.headless=true, -Dfile.encoding=UTF-8, -Djna.nosys=true, -Djdk.io.permissionsUseCanonicalPath=true, -Dio.netty.noUnsafe=true, -Dio.netty.noKeySetOptimization=true, -Dio.netty.recycler.maxCapacityPerThread=0, -Dlog4j.shutdownHookEnabled=false, -Dlog4j2.disable.jmx=true, -Dlog4j.skipJansi=true, -XX:+HeapDumpOnOutOfMemoryError, -Des.path.home=/usr/local/Cellar/elasticsearch@5.6/5.6.16/libexec]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [aggs-matrix-stats]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [ingest-common]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [lang-expression]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [lang-groovy]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [lang-mustache]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [lang-painless]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [parent-join]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [percolator]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [reindex]
[2020-01-09T11:30:27,727][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [transport-netty3]
[2020-01-09T11:30:27,728][INFO ][o.e.p.PluginsService     ] [Kho6DoB] loaded module [transport-netty4]
[2020-01-09T11:30:27,728][INFO ][o.e.p.PluginsService     ] [Kho6DoB] no plugins loaded
[2020-01-09T11:30:28,903][INFO ][o.e.d.DiscoveryModule    ] [Kho6DoB] using discovery type [single-node]
[2020-01-09T11:30:29,253][INFO ][o.e.n.Node               ] initialized
[2020-01-09T11:30:29,253][INFO ][o.e.n.Node               ] [Kho6DoB] starting ...
[2020-01-09T11:30:29,376][INFO ][o.e.t.TransportService   ] [Kho6DoB] publish_address {127.0.0.1:9300}, bound_addresses {127.0.0.1:9300}
[2020-01-09T11:30:29,396][INFO ][o.e.c.s.ClusterService   ] [Kho6DoB] new_master {Kho6DoB}{Kho6DoBCR9CJe1cI8LaVoQ}{9GcpIOKjRPaHAUkFQ4cwaw}{127.0.0.1}{127.0.0.1:9300}, reason: single-node-start-initial-join[{Kho6DoB}{Kho6DoBCR9CJe1cI8LaVoQ}{9GcpIOKjRPaHAUkFQ4cwaw}{127.0.0.1}{127.0.0.1:9300}]
[2020-01-09T11:30:29,407][INFO ][o.e.h.n.Netty4HttpServerTransport] [Kho6DoB] publish_address {127.0.0.1:9201}, bound_addresses {127.0.0.1:9201}
[2020-01-09T11:30:29,407][INFO ][o.e.n.Node               ] [Kho6DoB] started
detected start, broke
returning process
Started: http://localhost:8000
CREATE MAPPING RUNNING
INFO:encoded:Loaded 77 of 77 user (phase 1). CREATED: 77, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 19 of 19 award (phase 1). CREATED: 19, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 33 of 33 lab (phase 1). CREATED: 33, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 23 of 23 organism (phase 1). CREATED: 23, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 23 of 23 source (phase 1). CREATED: 23, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 51 of 51 gene (phase 1). CREATED: 51, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 31 of 31 target (phase 1). CREATED: 31, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 28 of 28 publication (phase 1). CREATED: 28, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 37 of 37 document (phase 1). CREATED: 37, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 19 of 19 antibody_lot (phase 1). CREATED: 19, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 31 of 31 biosample_type (phase 1). CREATED: 31, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 24 of 24 antibody_characterization (phase 1). CREATED: 24, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 13 of 13 treatment (phase 1). CREATED: 13, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 7 of 7 mouse_donor (phase 1). CREATED: 7, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 3 of 3 fly_donor (phase 1). CREATED: 3, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 worm_donor (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 13 of 13 human_donor (phase 1). CREATED: 13, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 donor_characterization (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 11 of 11 genetic_modification (phase 1). CREATED: 11, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 genetic_modification_characterization (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 54 of 54 biosample (phase 1). CREATED: 54, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 biosample_characterization (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 14 of 14 platform (phase 1). CREATED: 14, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 60 of 60 library (phase 1). CREATED: 60, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 52 of 52 experiment (phase 1). CREATED: 52, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 5 of 5 functional_characterization_experiment (phase 1). CREATED: 5, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 72 of 72 replicate (phase 1). CREATED: 72, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 8 of 8 annotation (phase 1). CREATED: 8, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 project (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 publication_data (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 8 of 8 reference (phase 1). CREATED: 8, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 ucsc_browser_composite (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 matched_set (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 single_cell_rna_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 treatment_time_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 treatment_concentration_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 organism_development_series (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 replication_timing_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 aggregate_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 3 of 3 experiment_series (phase 1). CREATED: 3, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 reference_epigenome (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 26 of 26 software (phase 1). CREATED: 26, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 26 of 26 software_version (phase 1). CREATED: 26, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 30 of 30 analysis_step (phase 1). CREATED: 30, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 24 of 24 analysis_step_version (phase 1). CREATED: 24, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 12 of 12 pipeline (phase 1). CREATED: 12, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 12 of 12 analysis_step_run (phase 1). CREATED: 12, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 143 of 143 file (phase 1). CREATED: 143, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 star_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 gene_quantification_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 gene_type_quantification_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 bismark_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 cpg_correlation_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 atac_alignment_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 atac_alignment_enrichment_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 atac_library_complexity_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 atac_peak_enrichment_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 atac_replication_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 chip_alignment_samstat_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 chip_alignment_enrichment_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 chip_library_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 chip_peak_enrichment_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 chip_replication_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 chipseq_filter_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 micro_rna_quantification_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 micro_rna_mapping_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 long_read_rna_mapping_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 long_read_rna_quantification_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 samtools_flagstats_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 mad_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 3 of 3 correlation_quality_metric (phase 1). CREATED: 3, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 edwbamstats_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 hotspot_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 idr_summary_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 complexity_xcorr_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 duplicates_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 filtering_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 trimming_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 samtools_stats_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 idr_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 histone_chipseq_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 8 of 8 generic_quality_metric (phase 1). CREATED: 8, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 gencode_category_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 7 of 7 image (phase 1). CREATED: 7, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 36 of 36 page (phase 1). CREATED: 36, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 cart (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 access_key (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 77 of 77 user (phase 2). CREATED: 0, UPDATED: 77, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 publication (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 0 of 0 treatment (phase 2). CREATED: 0, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 mouse_donor (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 fly_donor (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 worm_donor (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 human_donor (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 biosample (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 3 of 3 library (phase 2). CREATED: 0, UPDATED: 3, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 11 of 11 experiment (phase 2). CREATED: 0, UPDATED: 11, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 3 of 3 functional_characterization_experiment (phase 2). CREATED: 0, UPDATED: 3, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 7 of 7 annotation (phase 2). CREATED: 0, UPDATED: 7, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 project (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 publication_data (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 reference (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 ucsc_browser_composite (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 matched_set (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 single_cell_rna_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 treatment_time_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 treatment_concentration_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 organism_development_series (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 replication_timing_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 aggregate_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 reference_epigenome (phase 2). CREATED: 0, UPDATED: 4, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 12 of 12 analysis_step (phase 2). CREATED: 0, UPDATED: 12, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 39 of 39 file (phase 2). CREATED: 0, UPDATED: 39, SKIPPED: 0, ERRORS: 0
Started. ^C to exit.
[2020-01-09T11:30:29,422][INFO ][o.e.g.GatewayService     ] [Kho6DoB] recovered [0] indices into cluster_state
[2020-01-09T11:30:32,428][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [snovault] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:32,658][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [snovault/PVsgjxkTQoeh3M_ZbW9qow] create_mapping [meta]
[2020-01-09T11:30:32,672][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [library] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:32,754][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [library/lFH7_-EDRkiQRF-kH3SShQ] create_mapping [library]
[2020-01-09T11:30:32,777][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [document] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:32,841][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [document/75uj7MZHRGyLOQTFNrGaeQ] create_mapping [document]
[2020-01-09T11:30:32,871][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [treatment_time_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,085][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [treatment_time_series/8IJAsEMbRGOYP3owX36A1Q] create_mapping [treatment_time_series]
[2020-01-09T11:30:33,156][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [experiment] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,297][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [experiment/4nzObPZXRiuxtiFRvpPkxQ] create_mapping [experiment]
[2020-01-09T11:30:33,371][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [biosample_type] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,449][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [biosample_type/OoDmmbDlSDOjaiDNCKaUbg] create_mapping [biosample_type]
[2020-01-09T11:30:33,463][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [hotspot_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,514][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [hotspot_quality_metric/ItyiTTm6SiqvVmyH12-7SQ] create_mapping [hotspot_quality_metric]
[2020-01-09T11:30:33,525][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [chip_peak_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,577][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [chip_peak_enrichment_quality_metric/6nZfstBOSQiax0YJPxb-aA] create_mapping [chip_peak_enrichment_quality_metric]
[2020-01-09T11:30:33,588][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [generic_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,638][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [generic_quality_metric/97VOuXUmT1qk5Q1rRGoNlg] create_mapping [generic_quality_metric]
[2020-01-09T11:30:33,647][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [testing_dependencies] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,695][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [testing_dependencies/mlO6xPPDR0m8N9L9BY-2Ww] create_mapping [testing_dependencies]
[2020-01-09T11:30:33,709][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [annotation] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,781][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [annotation/Hx_vF3-tSbqui2oYTDdp5w] create_mapping [annotation]
[2020-01-09T11:30:33,805][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [gencode_category_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,844][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [gencode_category_quality_metric/vE-AY0BrTYmoAQWyFk6Qkg] create_mapping [gencode_category_quality_metric]
[2020-01-09T11:30:33,853][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [antibody_lot] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,906][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [antibody_lot/6bPUbjTJTgei2nX5iPlX_Q] create_mapping [antibody_lot]
[2020-01-09T11:30:33,918][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [samtools_stats_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:33,988][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [samtools_stats_quality_metric/oUwpX9E4RVu9ABIdZQztEQ] create_mapping [samtools_stats_quality_metric]
[2020-01-09T11:30:33,996][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [test-encode-item] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,067][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [test-encode-item/x17gd8PtRxiD0Z2NvaMmyg] create_mapping [test-encode-item]
[2020-01-09T11:30:34,075][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [award] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,222][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [award/i8oq5kJiSKG03PZq-d3o_g] create_mapping [award]
[2020-01-09T11:30:34,231][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [atac_replication_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,294][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [atac_replication_quality_metric/gZNJr7BUQ0GaHX1C_-ZgtA] create_mapping [atac_replication_quality_metric]
[2020-01-09T11:30:34,304][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [biosample] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,373][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [biosample/CH7rhLdfQGaHpmlmuPcLnA] create_mapping [biosample]
[2020-01-09T11:30:34,394][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [experiment_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,467][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [experiment_series/jDJ3nh2xR8mOohXi-08ljQ] create_mapping [experiment_series]
[2020-01-09T11:30:34,478][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [image] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,521][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [image/2nm0DHM9RDGa_TIrGsJqXA] create_mapping [image]
[2020-01-09T11:30:34,529][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [human_donor] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,585][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [human_donor/C5-NzAUnRia33emA72fb2g] create_mapping [human_donor]
[2020-01-09T11:30:34,594][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [atac_peak_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,634][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [atac_peak_enrichment_quality_metric/bLJnWBw_SbiXDEQ_Jq0A7g] create_mapping [atac_peak_enrichment_quality_metric]
[2020-01-09T11:30:34,641][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [chip_library_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,729][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [chip_library_quality_metric/RY5yanOMTuu2sMxxFNliGw] create_mapping [chip_library_quality_metric]
[2020-01-09T11:30:34,736][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [publication_data] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,780][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [publication_data/7I-MhiujQeeOr9I4avJpNQ] create_mapping [publication_data]
[2020-01-09T11:30:34,789][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [treatment] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,829][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [treatment/eywEPAswRE2eBWoTiQgRAA] create_mapping [treatment]
[2020-01-09T11:30:34,837][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [genetic_modification_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,887][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [genetic_modification_characterization/IZC0mJPxRRm5QlNLugXp3A] create_mapping [genetic_modification_characterization]
[2020-01-09T11:30:34,896][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [access_key] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,936][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [access_key/gKpjhQqAQgmu1eDcEV8P_g] create_mapping [access_key]
[2020-01-09T11:30:34,944][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [chip_replication_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:34,983][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [chip_replication_quality_metric/2FWUkeYUSiaTgEfTy5sgpw] create_mapping [chip_replication_quality_metric]
[2020-01-09T11:30:34,990][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [cart] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,030][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [cart/NTCEDzpdS6uj2iOCnHO5FA] create_mapping [cart]
[2020-01-09T11:30:35,037][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [filtering_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,081][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [filtering_quality_metric/xcgkpBRkT_CTmQ-sp_nHJA] create_mapping [filtering_quality_metric]
[2020-01-09T11:30:35,089][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [worm_donor] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,132][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [worm_donor/0S3faWQPRdqnKrpx1Mc9yQ] create_mapping [worm_donor]
[2020-01-09T11:30:35,142][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [user] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,182][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [user/yxpJIAjcT8SbE31Nf29W2A] create_mapping [user]
[2020-01-09T11:30:35,190][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [testing_link_target] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,230][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [testing_link_target/vMgiXuNlTFq7u6bQDDcqAw] create_mapping [testing_link_target]
[2020-01-09T11:30:35,238][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [long_read_rna_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,278][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [long_read_rna_quantification_quality_metric/LJtMMrMwS4WNerywGbVvyA] create_mapping [long_read_rna_quantification_quality_metric]
[2020-01-09T11:30:35,285][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [gene_type_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,388][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [gene_type_quantification_quality_metric/vcwPC0F_R5m-X5Lhlk6FvQ] create_mapping [gene_type_quantification_quality_metric]
[2020-01-09T11:30:35,396][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [histone_chipseq_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,437][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [histone_chipseq_quality_metric/ob7v5ZwzTlCKLJvEMohQJw] create_mapping [histone_chipseq_quality_metric]
[2020-01-09T11:30:35,449][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [organism_development_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,533][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [organism_development_series/CiW_5NmiSEaLc58ZU7GYWQ] create_mapping [organism_development_series]
[2020-01-09T11:30:35,565][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [platform] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,610][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [platform/hXXIAFE8Q4mcsxZ47b33Rg] create_mapping [platform]
[2020-01-09T11:30:35,617][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [testing_download] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,659][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [testing_download/B6JGxsKORDqpCTt7wKKt_Q] create_mapping [testing_download]
[2020-01-09T11:30:35,671][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [functional_characterization_experiment] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,740][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [functional_characterization_experiment/Y-gAjfTMT-ODelhCYkloWw] create_mapping [functional_characterization_experiment]
[2020-01-09T11:30:35,763][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [bismark_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,810][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [bismark_quality_metric/q-JF3FOFTbGPZ9pH5B-3Og] create_mapping [bismark_quality_metric]
[2020-01-09T11:30:35,818][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [chip_alignment_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,862][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [chip_alignment_enrichment_quality_metric/0UwU5b4SRyKgCgV5wsZmyA] create_mapping [chip_alignment_enrichment_quality_metric]
[2020-01-09T11:30:35,871][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [gene_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,916][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [gene_quantification_quality_metric/YQeEyz0RS2GvApVGbPmAoQ] create_mapping [gene_quantification_quality_metric]
[2020-01-09T11:30:35,923][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [complexity_xcorr_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:35,966][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [complexity_xcorr_quality_metric/o4OnpLoUROGJDtfg6nBAQA] create_mapping [complexity_xcorr_quality_metric]
[2020-01-09T11:30:35,978][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [matched_set] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,057][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [matched_set/3WGg1HRgS4-OGosutdbVzA] create_mapping [matched_set]
[2020-01-09T11:30:36,093][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [lab] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,148][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [lab/ukFxX4dnQi-oknDoQLkrOA] create_mapping [lab]
[2020-01-09T11:30:36,157][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [testing_link_source] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,205][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [testing_link_source/er8FsifpRYCTtvk59-Sswg] create_mapping [testing_link_source]
[2020-01-09T11:30:36,218][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [aggregate_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,325][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [aggregate_series/Qzo26tKIT7W9K7uq93cZ9g] create_mapping [aggregate_series]
[2020-01-09T11:30:36,351][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [software] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,397][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [software/EG7ZlVuUQ5ee5qcpbDpg9Q] create_mapping [software]
[2020-01-09T11:30:36,411][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [single_cell_rna_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,490][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [single_cell_rna_series/84Z38bQVR46RXTMtbUHkIA] create_mapping [single_cell_rna_series]
[2020-01-09T11:30:36,515][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [pipeline] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,575][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [pipeline/Ixv27V0yT96Hw_2K0eUfYA] create_mapping [pipeline]
[2020-01-09T11:30:36,587][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [atac_alignment_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,644][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [atac_alignment_enrichment_quality_metric/8PNWwcruQK2CPkmYBeq5JA] create_mapping [atac_alignment_enrichment_quality_metric]
[2020-01-09T11:30:36,652][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [analysis_step_run] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,702][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [analysis_step_run/_6PRQMdQQbCAqbYjd3booA] create_mapping [analysis_step_run]
[2020-01-09T11:30:36,709][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [micro_rna_mapping_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,759][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [micro_rna_mapping_quality_metric/qZS8YTU6TZexNydv3Q6wYg] create_mapping [micro_rna_mapping_quality_metric]
[2020-01-09T11:30:36,767][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [edwbamstats_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,825][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [edwbamstats_quality_metric/LRhoDBn3RdurAXYznTatig] create_mapping [edwbamstats_quality_metric]
[2020-01-09T11:30:36,837][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [treatment_concentration_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:36,926][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [treatment_concentration_series/SElqHarySz27-P9yiIe4jQ] create_mapping [treatment_concentration_series]
[2020-01-09T11:30:36,951][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [source] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,004][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [source/0vBzer5nQKC_adjbb5IEdQ] create_mapping [source]
[2020-01-09T11:30:37,012][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [duplicates_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,062][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [duplicates_quality_metric/Xb5UQN1vSryXsRp9gZaRAg] create_mapping [duplicates_quality_metric]
[2020-01-09T11:30:37,070][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [idr_summary_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,123][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [idr_summary_quality_metric/KSrdYCMmRnivvWAvgabd8Q] create_mapping [idr_summary_quality_metric]
[2020-01-09T11:30:37,131][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [chip_alignment_samstat_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,185][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [chip_alignment_samstat_quality_metric/_0RRa18sSjW01htxzqN6TQ] create_mapping [chip_alignment_samstat_quality_metric]
[2020-01-09T11:30:37,192][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [publication] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,250][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [publication/VIq0Vkq8QVSiw0MfXN6UIQ] create_mapping [publication]
[2020-01-09T11:30:37,259][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [page] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,319][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [page/mzJ-vcYvS6Kj7VrBnAb4EQ] create_mapping [page]
[2020-01-09T11:30:37,327][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [analysis_step] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,387][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [analysis_step/vo88D3Y1QniCUxx1aewBVw] create_mapping [analysis_step]
[2020-01-09T11:30:37,395][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [testing_server_default] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,450][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [testing_server_default/zGgJzfqfRDiPAImySQLCPA] create_mapping [testing_server_default]
[2020-01-09T11:30:37,465][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [replication_timing_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,556][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [replication_timing_series/AOH5xZ27QDuAmOhxYzPHBw] create_mapping [replication_timing_series]
[2020-01-09T11:30:37,602][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [atac_alignment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,660][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [atac_alignment_quality_metric/JoxDQFCVRLqpNWEAxbxovw] create_mapping [atac_alignment_quality_metric]
[2020-01-09T11:30:37,673][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [reference_epigenome] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,782][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [reference_epigenome/I0o9om7EQFi5-EAR-L0XJQ] create_mapping [reference_epigenome]
[2020-01-09T11:30:37,811][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [cpg_correlation_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,868][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [cpg_correlation_quality_metric/zCPMHOCaQxmzzObDTA7Q4A] create_mapping [cpg_correlation_quality_metric]
[2020-01-09T11:30:37,878][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [ucsc_browser_composite] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:37,946][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [ucsc_browser_composite/1V04SGj1SEyKzt4cG0hanA] create_mapping [ucsc_browser_composite]
[2020-01-09T11:30:37,958][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [star_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,009][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [star_quality_metric/9VfOSDbsTE6kMQjdv9l0Zw] create_mapping [star_quality_metric]
[2020-01-09T11:30:38,016][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [trimming_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,067][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [trimming_quality_metric/rJzY8Xp8QLKDUFBzjoYnsA] create_mapping [trimming_quality_metric]
[2020-01-09T11:30:38,078][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [reference] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,135][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [reference/x_OLI1YvT8SJO3C7-kOjoA] create_mapping [reference]
[2020-01-09T11:30:38,147][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [atac_library_complexity_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,198][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [atac_library_complexity_quality_metric/m-hqXtKiT42GJsaLjBlZKA] create_mapping [atac_library_complexity_quality_metric]
[2020-01-09T11:30:38,206][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [replicate] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,261][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [replicate/3fIgF3-qQv2vhVjq18ru7w] create_mapping [replicate]
[2020-01-09T11:30:38,270][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [correlation_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,321][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [correlation_quality_metric/e5m6qR96RNGWQ45UNdNT-Q] create_mapping [correlation_quality_metric]
[2020-01-09T11:30:38,329][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [micro_rna_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,380][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [micro_rna_quantification_quality_metric/XzFPOeznS2-HkuXct17pjA] create_mapping [micro_rna_quantification_quality_metric]
[2020-01-09T11:30:38,387][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [donor_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,450][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [donor_characterization/H1d3IuLTTiiIujHXTVUumw] create_mapping [donor_characterization]
[2020-01-09T11:30:38,458][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [target] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,506][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [target/B3SDvPtSSxqpAi-SvQZtPg] create_mapping [target]
[2020-01-09T11:30:38,513][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [organism] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,564][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [organism/m9Ekr2ILQDqBzsq152fUig] create_mapping [organism]
[2020-01-09T11:30:38,571][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [gene] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,622][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [gene/tAGOUcURRLGHldrX-xL25A] create_mapping [gene]
[2020-01-09T11:30:38,630][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [mouse_donor] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,684][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [mouse_donor/isyeuOseQz63ZX_QQPKydQ] create_mapping [mouse_donor]
[2020-01-09T11:30:38,693][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [samtools_flagstats_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,743][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [samtools_flagstats_quality_metric/tSkowhrrSO-m_ZAFr0AdxQ] create_mapping [samtools_flagstats_quality_metric]
[2020-01-09T11:30:38,752][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [file] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,813][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [file/i4MQ3QFgQjKH957Ou53GrQ] create_mapping [file]
[2020-01-09T11:30:38,827][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [genetic_modification] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,882][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [genetic_modification/e9YkrlxKQl-cZUHvdG33-Q] create_mapping [genetic_modification]
[2020-01-09T11:30:38,893][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [idr_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:38,946][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [idr_quality_metric/-rx5x2x5Qai2UOoeX6YwDg] create_mapping [idr_quality_metric]
[2020-01-09T11:30:38,955][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [long_read_rna_mapping_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,018][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [long_read_rna_mapping_quality_metric/AAJa-_QvSuSx84WF9G8FaQ] create_mapping [long_read_rna_mapping_quality_metric]
[2020-01-09T11:30:39,025][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [mad_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,082][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [mad_quality_metric/OKgrdDN_QjiL5oKwkhmo5g] create_mapping [mad_quality_metric]
[2020-01-09T11:30:39,091][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [fly_donor] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,146][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [fly_donor/25iHsXDzQZq_bBHO_Ofxjg] create_mapping [fly_donor]
[2020-01-09T11:30:39,155][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [software_version] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,208][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [software_version/TqI7W9QNSjmFmlA4zzv5zg] create_mapping [software_version]
[2020-01-09T11:30:39,216][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [antibody_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,274][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [antibody_characterization/hcNaHvuVQyupAmuVZgSS1Q] create_mapping [antibody_characterization]
[2020-01-09T11:30:39,283][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [chipseq_filter_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,339][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [chipseq_filter_quality_metric/oc4xf1LeT5mWlXVtv_O18A] create_mapping [chipseq_filter_quality_metric]
[2020-01-09T11:30:39,347][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [testing_post_put_patch] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,402][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [testing_post_put_patch/516240X4S0qvoRHuJYCl7g] create_mapping [testing_post_put_patch]
[2020-01-09T11:30:39,413][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [project] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,481][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [project/G9e5RHTzSmSX6dgpVppu3A] create_mapping [project]
[2020-01-09T11:30:39,493][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [analysis_step_version] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,551][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [analysis_step_version/8-pKlScwSXS94276e5O5Ug] create_mapping [analysis_step_version]
[2020-01-09T11:30:39,559][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [testing_key] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,617][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [testing_key/qUDGAFIJSGijqgyp65JJTw] create_mapping [testing_key]
[2020-01-09T11:30:39,624][INFO ][o.e.c.m.MetaDataCreateIndexService] [Kho6DoB] [biosample_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T11:30:39,681][INFO ][o.e.c.m.MetaDataMappingService] [Kho6DoB] [biosample_characterization/ZUT0uqZjS1ShaBUnBJ1YCA] create_mapping [biosample_characterization]`

Answer 18 · 2020-01-09T20:26:22.000Z

Thanks. Here is mine. Not sure if this is normal.

encoded@datanav-demo:~/encoded$ bin/dev-servers development.ini --app-name app --clear --init --load
The files belonging to this database system will be owned by user "encoded".
This user must also own the server process.

The database cluster will be initialized with locale "en_US.UTF-8".
The default database encoding has accordingly been set to "UTF8".
The default text search configuration will be set to "english".

Data page checksums are disabled.

creating directory /tmp/snovault/pgdata ... ok
creating subdirectories ... ok
selecting default max_connections ... 100
selecting default shared_buffers ... 128MB
creating configuration files ... ok
creating template1 database in /tmp/snovault/pgdata/base/1 ... ok
initializing pg_authid ... ok
initializing dependencies ... ok
creating system views ... ok
loading system objects' descriptions ... ok
creating collations ... ok
creating conversions ... ok
creating dictionaries ... ok
setting privileges on built-in objects ... ok
creating information schema ... ok
loading PL/pgSQL server-side language ... ok
vacuuming database template1 ... ok
copying template1 to template0 ... ok
copying template1 to postgres ... ok
syncing data to disk ... ok

Success. You can now start the database server using:

postgres -D /tmp/snovault/pgdata

or
pg_ctl -D /tmp/snovault/pgdata -l logfile start

LOG: database system was shut down at 2020-01-09 20:18:24 UTC
LOG: MultiXact member wraparound protections are now enabled
LOG: autovacuum launcher started
LOG: database system is ready to accept connections
Created: postgresql://postgres@:5432/postgres?host=/tmp/snovault/pgdata
NOT IN TRAVIS
['elasticsearch', '-Enetwork.host=127.0.0.1', '-Ehttp.port=9201', '-Epath.data=/tmp/snovault/esdata/data', '-Epath.logs=/tmp/snovault/esdata/logs', '-Epath.conf=./conf']
[2020-01-09T20:18:27,190][INFO ][o.e.n.Node ] [] initializing ...
[2020-01-09T20:18:27,292][INFO ][o.e.e.NodeEnvironment ] [t7XuQXi] using [1] data paths, mounts [[/ (/dev/sda1)]], net usable_space [24.8gb], net total_space [29.4gb], spins? [possibly], types [ext4]
[2020-01-09T20:18:27,292][INFO ][o.e.e.NodeEnvironment ] [t7XuQXi] heap size [6.9gb], compressed ordinary object pointers [true]
[2020-01-09T20:18:27,294][INFO ][o.e.n.Node ] node name [t7XuQXi] derived from node ID [t7XuQXihRdWuwt7xM5DE4g]; set [node.name] to override
[2020-01-09T20:18:27,295][INFO ][o.e.n.Node ] version[5.6.3], pid[7319], build[1a2f265/2017-10-06T20:33:39.012Z], OS[Linux/4.4.0-148-generic/amd64], JVM[Private Build/OpenJDK 64-Bit Server VM/1.8.0_222/25.222-b10]
[2020-01-09T20:18:27,295][INFO ][o.e.n.Node ] JVM arguments [-Des.path.home=/usr/share/elasticsearch]
[2020-01-09T20:18:28,179][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [aggs-matrix-stats]
[2020-01-09T20:18:28,179][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [ingest-common]
[2020-01-09T20:18:28,179][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [lang-expression]
[2020-01-09T20:18:28,179][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [lang-groovy]
[2020-01-09T20:18:28,179][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [lang-mustache]
[2020-01-09T20:18:28,180][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [lang-painless]
[2020-01-09T20:18:28,180][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [parent-join]
[2020-01-09T20:18:28,180][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [percolator]
[2020-01-09T20:18:28,180][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [reindex]
[2020-01-09T20:18:28,180][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [transport-netty3]
[2020-01-09T20:18:28,180][INFO ][o.e.p.PluginsService ] [t7XuQXi] loaded module [transport-netty4]
[2020-01-09T20:18:28,180][INFO ][o.e.p.PluginsService ] [t7XuQXi] no plugins loaded
[2020-01-09T20:18:29,774][INFO ][o.e.d.DiscoveryModule ] [t7XuQXi] using discovery type [single-node]
[2020-01-09T20:18:30,282][INFO ][o.e.n.Node ] initialized
[2020-01-09T20:18:30,282][INFO ][o.e.n.Node ] [t7XuQXi] starting ...
[2020-01-09T20:18:30,316][INFO ][i.n.u.i.PlatformDependent] Your platform does not provide complete low-level API for accessing direct buffers reliably. Unless explicitly requested, heap buffer will always be preferred to avoid potential system instability.
[2020-01-09T20:18:30,426][INFO ][o.e.t.TransportService ] [t7XuQXi] publish_address {127.0.0.1:9300}, bound_addresses {127.0.0.1:9300}
[2020-01-09T20:18:30,438][WARN ][o.e.b.BootstrapChecks ] [t7XuQXi] initial heap size [528482304] not equal to maximum heap size [8430551040]; this can cause resize pauses and prevents mlockall from locking the entire heap
[2020-01-09T20:18:30,455][INFO ][o.e.c.s.ClusterService ] [t7XuQXi] new_master {t7XuQXi}{t7XuQXihRdWuwt7xM5DE4g}{Lx_wxG7DSYOdHFX9UKNzCQ}{127.0.0.1}{127.0.0.1:9300}, reason: single-node-start-initial-join[{t7XuQXi}{t7XuQXihRdWuwt7xM5DE4g}{Lx_wxG7DSYOdHFX9UKNzCQ}{127.0.0.1}{127.0.0.1:9300}]
[2020-01-09T20:18:30,481][INFO ][o.e.h.n.Netty4HttpServerTransport] [t7XuQXi] publish_address {127.0.0.1:9201}, bound_addresses {127.0.0.1:9201}
[2020-01-09T20:18:30,481][INFO ][o.e.n.Node ] [t7XuQXi] started
detected start, broke
returning process
Started: http://localhost:8000
CREATE MAPPING RUNNING
INFO:encoded:Loaded 77 of 77 user (phase 1). CREATED: 77, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 19 of 19 award (phase 1). CREATED: 19, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 33 of 33 lab (phase 1). CREATED: 33, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 23 of 23 organism (phase 1). CREATED: 23, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 23 of 23 source (phase 1). CREATED: 23, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 51 of 51 gene (phase 1). CREATED: 51, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 31 of 31 target (phase 1). CREATED: 31, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 28 of 28 publication (phase 1). CREATED: 28, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 37 of 37 document (phase 1). CREATED: 37, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 19 of 19 antibody_lot (phase 1). CREATED: 19, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 31 of 31 biosample_type (phase 1). CREATED: 31, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 24 of 24 antibody_characterization (phase 1). CREATED: 24, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 13 of 13 treatment (phase 1). CREATED: 13, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 7 of 7 mouse_donor (phase 1). CREATED: 7, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 3 of 3 fly_donor (phase 1). CREATED: 3, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 worm_donor (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 13 of 13 human_donor (phase 1). CREATED: 13, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 donor_characterization (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 11 of 11 genetic_modification (phase 1). CREATED: 11, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 genetic_modification_characterization (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 54 of 54 biosample (phase 1). CREATED: 54, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 biosample_characterization (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 14 of 14 platform (phase 1). CREATED: 14, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 60 of 60 library (phase 1). CREATED: 60, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 52 of 52 experiment (phase 1). CREATED: 52, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 5 of 5 functional_characterization_experiment (phase 1). CREATED: 5, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 72 of 72 replicate (phase 1). CREATED: 72, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 8 of 8 annotation (phase 1). CREATED: 8, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 project (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 publication_data (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 8 of 8 reference (phase 1). CREATED: 8, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 ucsc_browser_composite (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 matched_set (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 single_cell_rna_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 treatment_time_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 treatment_concentration_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 organism_development_series (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 replication_timing_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 aggregate_series (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 3 of 3 experiment_series (phase 1). CREATED: 3, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 reference_epigenome (phase 1). CREATED: 4, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 26 of 26 software (phase 1). CREATED: 26, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 26 of 26 software_version (phase 1). CREATED: 26, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 30 of 30 analysis_step (phase 1). CREATED: 30, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 24 of 24 analysis_step_version (phase 1). CREATED: 24, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 12 of 12 pipeline (phase 1). CREATED: 12, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 12 of 12 analysis_step_run (phase 1). CREATED: 12, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 143 of 143 file (phase 1). CREATED: 143, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 star_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 gene_quantification_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 gene_type_quantification_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 bismark_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 cpg_correlation_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 atac_alignment_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 atac_alignment_enrichment_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 atac_library_complexity_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 atac_peak_enrichment_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 atac_replication_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 chip_alignment_samstat_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 chip_alignment_enrichment_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 chip_library_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 chip_peak_enrichment_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 chip_replication_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 chipseq_filter_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 micro_rna_quantification_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 micro_rna_mapping_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 long_read_rna_mapping_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 long_read_rna_quantification_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 samtools_flagstats_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 mad_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 3 of 3 correlation_quality_metric (phase 1). CREATED: 3, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 edwbamstats_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 hotspot_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 idr_summary_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 complexity_xcorr_quality_metric (phase 1). CREATED: 2, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 duplicates_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 filtering_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 trimming_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 samtools_stats_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 idr_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 histone_chipseq_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 8 of 8 generic_quality_metric (phase 1). CREATED: 8, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 gencode_category_quality_metric (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 7 of 7 image (phase 1). CREATED: 7, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 36 of 36 page (phase 1). CREATED: 36, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 cart (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 access_key (phase 1). CREATED: 1, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 77 of 77 user (phase 2). CREATED: 0, UPDATED: 77, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 publication (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 0 of 0 treatment (phase 2). CREATED: 0, UPDATED: 0, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 mouse_donor (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 fly_donor (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 worm_donor (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 human_donor (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 biosample (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 3 of 3 library (phase 2). CREATED: 0, UPDATED: 3, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 11 of 11 experiment (phase 2). CREATED: 0, UPDATED: 11, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 3 of 3 functional_characterization_experiment (phase 2). CREATED: 0, UPDATED: 3, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 7 of 7 annotation (phase 2). CREATED: 0, UPDATED: 7, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 project (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 publication_data (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 reference (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 ucsc_browser_composite (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 matched_set (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 single_cell_rna_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 treatment_time_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 treatment_concentration_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 2 of 2 organism_development_series (phase 2). CREATED: 0, UPDATED: 2, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 replication_timing_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 1 of 1 aggregate_series (phase 2). CREATED: 0, UPDATED: 1, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 4 of 4 reference_epigenome (phase 2). CREATED: 0, UPDATED: 4, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 12 of 12 analysis_step (phase 2). CREATED: 0, UPDATED: 12, SKIPPED: 0, ERRORS: 0
INFO:encoded:Loaded 39 of 39 file (phase 2). CREATED: 0, UPDATED: 39, SKIPPED: 0, ERRORS: 0
Started. ^C to exit.
[2020-01-09T20:18:30,514][INFO ][o.e.g.GatewayService ] [t7XuQXi] recovered [0] indices into cluster_state
[2020-01-09T20:18:33,740][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [snovault] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:34,185][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [snovault/D8IyM5KfR9OKhKbDenSl0A] create_mapping [meta]
[2020-01-09T20:18:34,230][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [reference] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:34,653][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [reference/j5pij7-hSp2coYaWbzrNxA] create_mapping [reference]
[2020-01-09T20:18:34,720][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [organism] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:35,026][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [organism/RL_2-hkxSUOCTmbE9AKDRg] create_mapping [organism]
[2020-01-09T20:18:35,062][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [generic_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:35,342][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [generic_quality_metric/8GBKkuNtSwaR8IPqxUA5SA] create_mapping [generic_quality_metric]
[2020-01-09T20:18:35,374][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [bismark_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:35,665][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [bismark_quality_metric/oe8v3BqpTB6Pne1ZvDZcsA] create_mapping [bismark_quality_metric]
[2020-01-09T20:18:35,694][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [target] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:35,978][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [target/9KcwyzQXQoeAyjxFtmp0ng] create_mapping [target]
[2020-01-09T20:18:36,009][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [biosample_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:36,304][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [biosample_characterization/sAPkEQaNTTGRPy39EqPkew] create_mapping [biosample_characterization]
[2020-01-09T20:18:36,347][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [testing_server_default] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:36,638][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [testing_server_default/4sJzGDzcRZGjCRAqJL4sQQ] create_mapping [testing_server_default]
[2020-01-09T20:18:36,676][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [project] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:37,025][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [project/APtKQDKzRtyt3eyaB60UMw] create_mapping [project]
[2020-01-09T20:18:37,100][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [replication_timing_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:37,525][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [replication_timing_series/a1eeHYtgRla4ZOBTknUKGA] create_mapping [replication_timing_series]
[2020-01-09T20:18:37,613][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [ucsc_browser_composite] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:37,912][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [ucsc_browser_composite/GngdD1mDTpaZDAtK1xgXGg] create_mapping [ucsc_browser_composite]
[2020-01-09T20:18:37,954][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [publication] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:38,226][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [publication/-bf2akjXQ2e_-ZEBbtHO_A] create_mapping [publication]
[2020-01-09T20:18:38,267][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [aggregate_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:38,678][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [aggregate_series/_qkPdbmPSEeo3013OxpEdw] create_mapping [aggregate_series]
[2020-01-09T20:18:38,806][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [filtering_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:39,088][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [filtering_quality_metric/LBIo4HJgQbqGx1oFr9nzXw] create_mapping [filtering_quality_metric]
[2020-01-09T20:18:39,115][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [genetic_modification] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:39,425][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [genetic_modification/u5kcMGgCSDaNxUILZXNMPg] create_mapping [genetic_modification]
[2020-01-09T20:18:39,466][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [file] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:39,774][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [file/GnonPC4kRHebK_mAZ-rR5Q] create_mapping [file]
[2020-01-09T20:18:39,817][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [micro_rna_mapping_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:40,127][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [micro_rna_mapping_quality_metric/KOBihkfwS8OeY_yT6zZxJA] create_mapping [micro_rna_mapping_quality_metric]
[2020-01-09T20:18:40,170][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [biosample_type] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:40,472][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [biosample_type/MqRe8L27Q86J2UYTQqQtXg] create_mapping [biosample_type]
[2020-01-09T20:18:40,506][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [fly_donor] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:40,829][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [fly_donor/oU7Hzfg6Tny8Yp_YnUWbOQ] create_mapping [fly_donor]
[2020-01-09T20:18:40,859][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [award] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:41,195][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [award/rQmNhIXaRhOUMO2H-stAIw] create_mapping [award]
[2020-01-09T20:18:41,228][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [micro_rna_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:41,553][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [micro_rna_quantification_quality_metric/3KbeIUBNSgKeL0qk_3VODg] create_mapping [micro_rna_quantification_quality_metric]
[2020-01-09T20:18:41,595][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [biosample] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:41,960][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [biosample/bNlOaBG1S9CtnsijFyzYSg] create_mapping [biosample]
[2020-01-09T20:18:42,020][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [chip_peak_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:42,360][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [chip_peak_enrichment_quality_metric/gGPj2cCvSRG3bC1NWUM97A] create_mapping [chip_peak_enrichment_quality_metric]
[2020-01-09T20:18:42,392][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [gene_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:42,709][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [gene_quantification_quality_metric/9z2VW9FrTECu-CUPyE0e5w] create_mapping [gene_quantification_quality_metric]
[2020-01-09T20:18:42,734][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [antibody_lot] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:43,137][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [antibody_lot/aKQlPzhfQ3CxKcauybxz3Q] create_mapping [antibody_lot]
[2020-01-09T20:18:43,187][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [software_version] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:43,541][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [software_version/gN4FM6Z5TYWkkrRAs2gUGQ] create_mapping [software_version]
[2020-01-09T20:18:43,580][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [publication_data] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:43,927][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [publication_data/gwnZPSvAQsagZ1VpWUoUTw] create_mapping [publication_data]
[2020-01-09T20:18:43,961][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [testing_link_target] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:44,278][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [testing_link_target/lwNl8E1mRiG1rgO2NqaHMA] create_mapping [testing_link_target]
[2020-01-09T20:18:44,314][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [gencode_category_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:44,722][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [gencode_category_quality_metric/LdTGnhQLStK1Jv4UKzGmpg] create_mapping [gencode_category_quality_metric]
[2020-01-09T20:18:44,764][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [treatment_concentration_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:45,307][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [treatment_concentration_series/0bXrhL9lSKukKUsOuVIYNA] create_mapping [treatment_concentration_series]
[2020-01-09T20:18:45,374][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [chipseq_filter_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:45,750][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [chipseq_filter_quality_metric/OZGbZnvwR9SCJEobgLEVCw] create_mapping [chipseq_filter_quality_metric]
[2020-01-09T20:18:45,788][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [user] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:46,077][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [user/lxnDzb9fSGSPtkhK3d94AQ] create_mapping [user]
[2020-01-09T20:18:46,107][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [experiment_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:46,398][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [experiment_series/nPNpk1u9TduFt-insEMa9w] create_mapping [experiment_series]
[2020-01-09T20:18:46,430][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [mouse_donor] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:46,701][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [mouse_donor/mHOOtinoQXOx_b5psQ4WQg] create_mapping [mouse_donor]
[2020-01-09T20:18:46,730][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [pipeline] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:47,003][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [pipeline/uhhocSswQh2gpv98vTFsjg] create_mapping [pipeline]
[2020-01-09T20:18:47,034][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [atac_replication_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:47,302][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [atac_replication_quality_metric/ZX_8ln96T-q6yR54awwMRA] create_mapping [atac_replication_quality_metric]
[2020-01-09T20:18:47,336][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [genetic_modification_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:47,610][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [genetic_modification_characterization/1fj-Cq-oQ1qbgyOO50YcNQ] create_mapping [genetic_modification_characterization]
[2020-01-09T20:18:47,637][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [antibody_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:47,908][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [antibody_characterization/qh6qPmQESCCumxz3EIMqpg] create_mapping [antibody_characterization]
[2020-01-09T20:18:47,934][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [testing_link_source] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:48,214][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [testing_link_source/0U8gwk_xSbSwp2WYmURYYA] create_mapping [testing_link_source]
[2020-01-09T20:18:48,239][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [testing_post_put_patch] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:48,518][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [testing_post_put_patch/b4UKfQtDSJql_JoIUim5QQ] create_mapping [testing_post_put_patch]
[2020-01-09T20:18:48,543][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [treatment] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:48,848][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [treatment/53baB_ShRzu0iBZW1nusuA] create_mapping [treatment]
[2020-01-09T20:18:48,873][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [idr_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:49,153][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [idr_quality_metric/3z8Oaa-aSwOB-lHGQ1pHrA] create_mapping [idr_quality_metric]
[2020-01-09T20:18:49,182][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [star_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:49,458][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [star_quality_metric/9uSsZkCcQHCxjj8JdYLbqA] create_mapping [star_quality_metric]
[2020-01-09T20:18:49,484][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [correlation_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:49,751][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [correlation_quality_metric/OgEoBThrRmGuh44njjlfCA] create_mapping [correlation_quality_metric]
[2020-01-09T20:18:49,778][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [mad_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:50,045][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [mad_quality_metric/paEpDxiCRliuNANzDoHuOA] create_mapping [mad_quality_metric]
[2020-01-09T20:18:50,071][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [analysis_step_version] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:50,345][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [analysis_step_version/5jqx59IuT9ifuOvhsXr67Q] create_mapping [analysis_step_version]
[2020-01-09T20:18:50,379][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [treatment_time_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:50,705][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [treatment_time_series/wvV6JjkfQbGkNrBraDNOdA] create_mapping [treatment_time_series]
[2020-01-09T20:18:50,762][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [long_read_rna_mapping_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:51,039][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [long_read_rna_mapping_quality_metric/O20YnH7zSy-Wr54Qr0cS5w] create_mapping [long_read_rna_mapping_quality_metric]
[2020-01-09T20:18:51,064][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [library] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:51,337][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [library/sWtXp7vURkOKo2ZmB-CnTA] create_mapping [library]
[2020-01-09T20:18:51,365][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [samtools_flagstats_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:51,630][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [samtools_flagstats_quality_metric/0eGZhq8hRHSIOQQMHuVE7w] create_mapping [samtools_flagstats_quality_metric]
[2020-01-09T20:18:51,655][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [chip_alignment_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:52,010][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [chip_alignment_enrichment_quality_metric/pI0Dp7tXRxCHG9odozvf7w] create_mapping [chip_alignment_enrichment_quality_metric]
[2020-01-09T20:18:52,041][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [testing_key] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:52,377][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [testing_key/AtGIQTTYSiqzKE7YRtezRQ] create_mapping [testing_key]
[2020-01-09T20:18:52,410][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [replicate] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:52,797][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [replicate/BfgIeb6TRxWjIEoGxkz_ow] create_mapping [replicate]
[2020-01-09T20:18:52,831][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [source] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:53,204][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [source/Sdb1COUySSu1nG8fZFZeAg] create_mapping [source]
[2020-01-09T20:18:53,241][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [annotation] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:53,631][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [annotation/EPI3qeEyRKSvn4GOPQkeLQ] create_mapping [annotation]
[2020-01-09T20:18:53,690][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [reference_epigenome] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:54,067][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [reference_epigenome/7AgaHs-bTSy4Jkm2sGm5vQ] create_mapping [reference_epigenome]
[2020-01-09T20:18:54,123][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [complexity_xcorr_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:54,468][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [complexity_xcorr_quality_metric/zBY8zJEjRQ-kK8B5WcRhnA] create_mapping [complexity_xcorr_quality_metric]
[2020-01-09T20:18:54,511][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [functional_characterization_experiment] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:54,871][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [functional_characterization_experiment/BpEtF1lDQ6qnzCOZDXBAQw] create_mapping [functional_characterization_experiment]
[2020-01-09T20:18:54,918][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [analysis_step] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:55,282][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [analysis_step/8tloKwU5TmKS3Tblq4tjoA] create_mapping [analysis_step]
[2020-01-09T20:18:55,312][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [edwbamstats_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:55,681][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [edwbamstats_quality_metric/ErECbypzRL-6pZuqpPipyg] create_mapping [edwbamstats_quality_metric]
[2020-01-09T20:18:55,711][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [hotspot_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:56,073][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [hotspot_quality_metric/hMQWmj1eQrKTJZzYdUwurA] create_mapping [hotspot_quality_metric]
[2020-01-09T20:18:56,114][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [human_donor] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:56,466][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [human_donor/yUg9iUBXR8WLUtT2f1g1Fg] create_mapping [human_donor]
[2020-01-09T20:18:56,500][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [atac_library_complexity_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:56,857][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [atac_library_complexity_quality_metric/jtBcK3FQQLyNs0Pjrfmq2g] create_mapping [atac_library_complexity_quality_metric]
[2020-01-09T20:18:56,889][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [chip_replication_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:57,239][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [chip_replication_quality_metric/ztmZIOwFQO6Hld3zv6IEVg] create_mapping [chip_replication_quality_metric]
[2020-01-09T20:18:57,292][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [trimming_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:57,673][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [trimming_quality_metric/DInXC965RIKaiMHFBafw6g] create_mapping [trimming_quality_metric]
[2020-01-09T20:18:57,704][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [worm_donor] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:58,064][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [worm_donor/5i6vlcj3SPOovJdWw1rHLQ] create_mapping [worm_donor]
[2020-01-09T20:18:58,091][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [gene] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:58,476][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [gene/iMXC7f3UQluU-1CUKfywbQ] create_mapping [gene]
[2020-01-09T20:18:58,517][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [single_cell_rna_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:58,934][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [single_cell_rna_series/pTF5hHQ1QlGScx5SvtcuJw] create_mapping [single_cell_rna_series]
[2020-01-09T20:18:58,990][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [organism_development_series] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:59,399][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [organism_development_series/oicWDaHvQgKV9CS1l9w9cQ] create_mapping [organism_development_series]
[2020-01-09T20:18:59,469][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [duplicates_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:18:59,839][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [duplicates_quality_metric/C9dUqK-YQ0KHgGn8oVQlhA] create_mapping [duplicates_quality_metric]
[2020-01-09T20:18:59,873][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [testing_dependencies] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:00,255][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [testing_dependencies/Jec0J19bSMeIAhp407Alag] create_mapping [testing_dependencies]
[2020-01-09T20:19:00,288][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [atac_peak_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:00,676][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [atac_peak_enrichment_quality_metric/YvebC1YVS2yp6las31pPmA] create_mapping [atac_peak_enrichment_quality_metric]
[2020-01-09T20:19:00,721][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [page] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:01,096][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [page/-Bl9C9rbTf6Q4_FPxCp7uw] create_mapping [page]
[2020-01-09T20:19:01,140][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [chip_alignment_samstat_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:01,511][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [chip_alignment_samstat_quality_metric/K_Tg67eyTpqrcwNcNZWKAw] create_mapping [chip_alignment_samstat_quality_metric]
[2020-01-09T20:19:01,549][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [access_key] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:01,934][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [access_key/GrY4XrbcQdqfN-4692FnMw] create_mapping [access_key]
[2020-01-09T20:19:01,968][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [cpg_correlation_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:02,316][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [cpg_correlation_quality_metric/SagYJfP8TauB2H0bEUcVLA] create_mapping [cpg_correlation_quality_metric]
[2020-01-09T20:19:02,347][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [lab] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:02,730][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [lab/V4a7Xu_xRWSqa2SIXIFfAw] create_mapping [lab]
[2020-01-09T20:19:02,765][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [long_read_rna_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:03,159][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [long_read_rna_quantification_quality_metric/8jFpMHl3Q0i1irpEiGyf1g] create_mapping [long_read_rna_quantification_quality_metric]
[2020-01-09T20:19:03,188][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [samtools_stats_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:03,511][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [samtools_stats_quality_metric/tK3r1dP7T52eWJ4KGwBihg] create_mapping [samtools_stats_quality_metric]
[2020-01-09T20:19:03,550][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [donor_characterization] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:03,905][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [donor_characterization/PSDw9sOjT922jYIL6hO6Xg] create_mapping [donor_characterization]
[2020-01-09T20:19:03,940][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [analysis_step_run] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:04,323][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [analysis_step_run/Qw-5GZf9Ruq5ehSgKWfS3Q] create_mapping [analysis_step_run]
[2020-01-09T20:19:04,360][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [atac_alignment_enrichment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:04,705][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [atac_alignment_enrichment_quality_metric/bjhULIX6S7Kzg-UlquNnnw] create_mapping [atac_alignment_enrichment_quality_metric]
[2020-01-09T20:19:04,736][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [atac_alignment_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:05,089][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [atac_alignment_quality_metric/XeuqvSQURsy8nmOSffw3IA] create_mapping [atac_alignment_quality_metric]
[2020-01-09T20:19:05,112][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [platform] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:05,481][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [platform/b3ej38H8QpOQOZyW-WOxlg] create_mapping [platform]
[2020-01-09T20:19:05,505][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [image] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:05,867][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [image/-Mk5dCuCSG-Si0nRFy0QrQ] create_mapping [image]
[2020-01-09T20:19:05,992][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [testing_download] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:06,363][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [testing_download/lvQVshWJQnuZJikZfZASrg] create_mapping [testing_download]
[2020-01-09T20:19:06,386][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [document] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:06,734][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [document/rtuKrcXlSbGoeGa_9vlj-A] create_mapping [document]
[2020-01-09T20:19:06,764][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [histone_chipseq_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:07,139][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [histone_chipseq_quality_metric/M90d6dUxReOJyV6dX1EN4w] create_mapping [histone_chipseq_quality_metric]
[2020-01-09T20:19:07,168][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [chip_library_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:07,584][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [chip_library_quality_metric/nDL37iQDQ8mMZ1XBWRYXgA] create_mapping [chip_library_quality_metric]
[2020-01-09T20:19:07,629][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [experiment] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:08,036][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [experiment/w6Rk1930TBKj_tuHcmlJ-A] create_mapping [experiment]
[2020-01-09T20:19:08,104][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [matched_set] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:08,510][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [matched_set/-xDMyqadSc6N7NZwgsa48A] create_mapping [matched_set]
[2020-01-09T20:19:08,588][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [software] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:08,958][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [software/9tZO89VhRJ2c51uo2lblvw] create_mapping [software]
[2020-01-09T20:19:08,990][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [idr_summary_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:09,362][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [idr_summary_quality_metric/LVs-BLlzS4Soo4lbe0k2NA] create_mapping [idr_summary_quality_metric]
[2020-01-09T20:19:09,391][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [test-encode-item] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:09,722][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [test-encode-item/2xBGtgqTQs2OofVhqNkz7w] create_mapping [test-encode-item]
[2020-01-09T20:19:09,748][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [gene_type_quantification_quality_metric] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:10,082][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [gene_type_quantification_quality_metric/spMD_OW8Rmyrjv6fSl23Vg] create_mapping [gene_type_quantification_quality_metric]
[2020-01-09T20:19:10,107][INFO ][o.e.c.m.MetaDataCreateIndexService] [t7XuQXi] [cart] creating index, cause [api], templates [], shards [5]/[2], mappings []
[2020-01-09T20:19:10,495][INFO ][o.e.c.m.MetaDataMappingService] [t7XuQXi] [cart/IKmgqek6TgOU1UXwYy0n7w] create_mapping [cart]

Answer 19 · 2020-01-09T21:12:26.000Z

yeah it's workiing just go in another terminal window and run
bin/pserve development.ini

Then navigate to localhost:8000

Answer 20 · 2020-01-09T23:05:27.000Z

It works :-). Thanks @hitz and @keenangraham. I'll be working on production next.