Pinned Repositories
BehaviorFlow
Code package that allows meta analyses of unsupervised behavior results
diffUTR
The diffUTR R package streamlines differential exon usage (DEU) analyses, and leverages existing DEU tools and alternative poly-adenylation site databases to enable differential 3' UTR usage analysis.
DLCAnalyzer
R Scripts to analyze deep lab cut point data and related data
DTFAB
Benchmark of methods for Differential TF activity from ATAC-seq data
enrichMiR
miRNA target enrichment analysis
epiwraps
Wrappers for dealing and plotting with epigenomics data
ethEpigen2023_materials
Materials for the 2023 ETH course "Bioinformatic approaches to regulatory genomics and epigenomics"
Privitera-et.-al.-2023
Effects of different NA modulations on the acute stress response
pupillometry
A shiny app for pupillometry data analysis
scanMiR
A set of tools for scanning for miRNA binding sites and working with affinity models
ETHZ-INS's Repositories
ETHZ-INS/DLCAnalyzer
R Scripts to analyze deep lab cut point data and related data
ETHZ-INS/BehaviorFlow
Code package that allows meta analyses of unsupervised behavior results
ETHZ-INS/diffUTR
The diffUTR R package streamlines differential exon usage (DEU) analyses, and leverages existing DEU tools and alternative poly-adenylation site databases to enable differential 3' UTR usage analysis.
ETHZ-INS/scanMiR
A set of tools for scanning for miRNA binding sites and working with affinity models
ETHZ-INS/enrichMiR
miRNA target enrichment analysis
ETHZ-INS/epiwraps
Wrappers for dealing and plotting with epigenomics data
ETHZ-INS/ethEpigen2023_materials
Materials for the 2023 ETH course "Bioinformatic approaches to regulatory genomics and epigenomics"
ETHZ-INS/pupillometry
A shiny app for pupillometry data analysis
ETHZ-INS/DTFAB
Benchmark of methods for Differential TF activity from ATAC-seq data
ETHZ-INS/Privitera-et.-al.-2023
Effects of different NA modulations on the acute stress response
ETHZ-INS/StressomeExplorer
ETHZ-INS/stressTRAPreanalysis
ETHZ-INS/circRNAs
ETHZ-INS/enrichMiR_benchmark
ETHZ-INS/scanMiR_paper
ETHZ-INS/scanMiRApp
Shiny app (and further functionalities) for scanMiR
ETHZ-INS/Sperm-RNA-Dex
ETHZ-INS/atac_frag_simulation
ETHZ-INS/DTFAIB
ETHZ-INS/enrichMiR_paper
scripts accompanying the enrichMiR paper
ETHZ-INS/ethEpigen2024_materials
Materials for the 2024 ETH course "Bioinformatic approaches to regulatory genomics and epigenomics"
ETHZ-INS/Fischer-Kretschmer-et-al.-2023
Code, objects and rendered rmarkdowns for
ETHZ-INS/Glucorticoid-protacs
ETHZ-INS/MG_A549
ETHZ-INS/scanMiRData
miRNA affinity models for the scanMiR package