Eco-Flow/synteny

Alter logic of inversion and translocation counting in Synteny Pipeline

chriswyatt1 opened this issue · 3 comments

Alter logic of inversion and translocation counting in Synteny Pipeline

Currently writing a script to do true counts of syntenic junctions that represent inversions, translocations, indels and duplicated regions.

Need to integrate into the synteny pipeline

We need to now check the unit testing and see if everything is still ok, or we need to add more tests

ce72f5c

unit testing has been updated to work with new logic