Australian Centre for Ecogenomics

University of Queensland, Australia

Pinned Repositories

api.gtdb.ecogenomic.org
https://api.gtdb.ecogenomic.org/
Language:Python3 4 00
BamM
Metagenomics-focused BAM file manipulation
Language:C16 5 337
basespace_project_downloader
Download project fastq files from BaseSpace
Language:Python3 4 20
CheckM
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Language:Python348 14 37973
FrankenQIIME
Feel the Franken
Language:Python4 4 01
gtdb-itol-decorate
Creates iTOL files for tree decoration, given a set of GTDB genomes.
Language:Python4 4 40
gtdb-species-clusters
Toolkit for establishing, updating, and validating GTDB species clusters
Language:Python20 4 03
GTDBNCBI
The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for archaea and bacteria.
Language:Python9 5 492
GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Language:Python479 23 46282
Mannotator
Microbial annotation pipeline - in progress
Language:Perl4 5 25

Ecogenomics/FrankenQIIME
Feel the Franken
Language:Python4 4 01
Ecogenomics/Mannotator
Microbial annotation pipeline - in progress
Language:Perl4 5 25
Ecogenomics/bioscripts
A collection of scripts written by ACE members
Language:Shell1 4 0
Ecogenomics/mungeGG
Join a taxonomy to the greengenes database
Language:Perl1 3 0
Ecogenomics/Normaliser
Perl program for normalising ecological data tables
Language:Perl1 3 0
Ecogenomics/scriptShed
sequence manipulation scripts that are actually useful
Language:Perl1 3 0
Ecogenomics/ionPairer
create a rough scaffold using ion torrent MP reads
Language:Perl5 0