EngreitzLab/CRISPR_comparison

File missing for running example comparison

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gapartel commented

Hi, thank you for this nice resource!

I was trying to run the example comparison workflow

nakemake --use-conda results/example/example_crispr_comparison.html -j1 -n

but a file seem to be missing the repo:

Missing input files for rule mergePredictionsWithExperiment: output: results/example/expt_pred_merged.txt.gz wildcards: comparison=example affected files: resources/genomic_features/K562_expressed_genes.tsv

NicoleYY77 commented

I didn't find the file results/example/example_crispr_comparison.html , either.... have you found the solution?

613weilin commented

I didn't find the file results/example/example_crispr_comparison.html , either.... have you found the solution?

results/example/example_crispr_comparison.html is the final output file, it will be generated when you run the pipeline.

NicoleYY77 commented

I didn't find the file results/example/example_crispr_comparison.html , either.... have you found the solution?

results/example/example_crispr_comparison.html is the final output file, it will be generated when you run the pipeline.

Thanks for telling! I just found that, too