using UnitMatch with data curated with Phy

[nadine-saluti]

Hi,

I am interested in trying your code on my data. I have chronic recordings with 64-channel silicone probes, which I sorted with Kilosort and then manually curated with Phy. I was wondering if you could help me use your code to skip the curation steps that you propose and already run UnitMatch on phy-curated data.

Thanks,
Nadin

[EnnyvanBeest]

Hi Nadin,

It would be best if you followed the Demo script
However, at the top, please specify Params.RunQualityMetrics = 0, this way the curation will be skipped and if there is phy-curated data, it should automatically load the phy curated data.

A side note is that I have never tried UnitMatch with 64-channel silicone probes. I think so long as the geometry remains stable (and can be read in from the Kilosort folder), it should work.

If the code doesn't work (again, I haven't tested it on other data than Neuropixels before), feel free to add two example kilosort folders here and I will try to have a look at it as soon as possible.

Best,
Enny

[nadine-saluti]

Thanks for the fast reply, I will try it and update you.

[EnnyvanBeest]

Hi Nadin,

please let me know if this worked for you. If so, could you close the issue?
If it doesn't work please let me know how we can further assist you by providing some example data and/or error messages.

Best,
Enny