test fails for one diff

Question

test fails for one diff

Closed this issue 7 years ago · 6 comments

/WiggleTools/test$ ../bin/wiggletools do isZero diff bam.bam cram.cram
[E::cram_get_ref] Failed to populate reference for id 29
[E::cram_decode_slice] Unable to fetch reference #29 167..186835
[E::cram_next_slice] Failure to decode slice
[E::cram_get_ref] Failed to populate reference for id 42
[E::cram_decode_slice] Unable to fetch reference #42 466..29856
[E::cram_next_slice] Failure to decode slice

All other tests pass.

Answer 1 · 2018-03-13T09:30:47.000Z

I suspect this is an issue with htslib... what version are you at?

Answer 2 · 2018-03-14T10:03:58.000Z

I am on the bleeding edge of the repository.

Answer 3 · 2018-03-14T18:04:56.000Z

Sorry, I was not clear, which version are you using for both:

Wiggletools
htslib

Answer 4 · 2018-04-11T10:14:28.000Z

Hello again Rohit,

I am unable to reproduce the bug, could you please confirm which versions you are working from?

Cheers,

Daniel

Answer 5 · 2018-04-11T10:48:13.000Z

Hi Daniel,

These are the versions I am working on.
Wiggletools - 1.2.2
htslib - 1.7-23-g9f9631d

Answer 6 · 2018-05-01T08:43:13.000Z

Sorry, I still cannot reproduce the bug with those exact versions (nor with the current head of htslib and WiggleTools).