Erastova-group/ClayCode

Fix ClayCode builder run

hp115 opened this issue · 1 comments

hp115 commented

Errors with the crash needing attention:

  • UC MMT assembling error
  • Kao 'T' error
  • counterions ratios currently must add up to 1, rather than be fractions like in the clays.org
  • do not delete the .csv of exp vs obtained data
  • minimisation: save run output into a foolder
  • repeat solvation & try to minimise OR print out current state & quit
  • write out log file
  • Remove atom types that are not in UC database if below a threshold value
  • Remove atom types that are not in FF if below a threshold value

some problems with atom ratios & charges still