Pinned Repositories
ashr
An R package for adaptive shrinkage
automaticanalysis
Automatic analysis
awesome-network-analysis
A curated list of awesome network analysis resources.
bigpca
development for CRAN package, 'bigpca' which provides pca and other functionality for the bigmemory suite of packages
CanlabCore
Core tools required for running Canlab Matlab toolboxes.
Computing-Communities-in-Large-Networks-Using-Random-Walks
Implementation of a random-walk based algorithm Walktrap to efficiently find clusters in graphs.
fcma-toolbox
Princeton Full Correlation Matrix Analysis (FCMA) Toolbox
ldsc
LD Score Regression (LDSC)
Lindquist_Dynamic_Correlation
Martin Lindquist's dynamic correlation toolboxes. Designed for fMRI analysis, useful for other applications too.
ReproducibleResearch
STAT8325 Spr2011
EugeniaRadulescu's Repositories
EugeniaRadulescu/ashr
An R package for adaptive shrinkage
EugeniaRadulescu/awesome-network-analysis
A curated list of awesome network analysis resources.
EugeniaRadulescu/Computing-Communities-in-Large-Networks-Using-Random-Walks
Implementation of a random-walk based algorithm Walktrap to efficiently find clusters in graphs.
EugeniaRadulescu/Data_availability_ERadulescu
EugeniaRadulescu/DGCA
Differential Gene Correlation Analysis
EugeniaRadulescu/eMAGMA-tutorial
A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
EugeniaRadulescu/epispot
epispot R package - Annotation-driven approach for large-scale joint regression with multiple responses
EugeniaRadulescu/eugenia_test
EugeniaRadulescu/fastconsensus
Fast consensus clustering in networks
EugeniaRadulescu/gephi
Gephi - The Open Graph Viz Platform
EugeniaRadulescu/h2o-tutorials
Tutorials and training material for the H2O Machine Learning Platform
EugeniaRadulescu/Isoform_BrainSpan
EugeniaRadulescu/L3
Network-based prediction of protein interactions
EugeniaRadulescu/latentcor
latentcor is an R package provides estimation for latent correlation with mixed data types (continuous, binary, truncated and ternary).
EugeniaRadulescu/LDAK-GBAT-paper-scripts
EugeniaRadulescu/libsvm
EugeniaRadulescu/limmaDE2
This package is deprecated - see RNAseqDE.
EugeniaRadulescu/mixedCCA
R package for sparse canonical correlation analysis with mixed data types (continuous, binary, zero-truncated)
EugeniaRadulescu/multiregional-networks
Code and example data corresponding to the manuscript "The architecture of brain co-expression reveals the brain-wide basis of disease susceptibility"
EugeniaRadulescu/nctpy
A toolbox for implementing Network Control Theory analyses in python
EugeniaRadulescu/NetBio
Network based ML approach from Kong et al 2022
EugeniaRadulescu/NetRep
R package containing functions for assessing the replication/preservation of network topology for weighted gene coexpression network modules in one or more independent datasets through permutation testing.
EugeniaRadulescu/organoid_regulomes
Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
EugeniaRadulescu/rigraph
igraph R package
EugeniaRadulescu/scWGCNA
WGCNA adapted for single cell RNA-seq
EugeniaRadulescu/Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
EugeniaRadulescu/SMCCA-GS_SSMCCA
Canonical correlation analysis for multi-omics: Application to cross-cohort analysis
EugeniaRadulescu/sva-devel
EugeniaRadulescu/toolbox
Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)
EugeniaRadulescu/TWIS
Code and scripts to run TWIS