Pinned Repositories
AnnoPred
Genetic risk prediction integrating LD and functional annotations
bfGWAS
single class model
biotools
A list of useful bioinformatics resources
BoxPlotR.shiny
shiny application to generate box plots with R
burden_testing
A collection of scripts to run genome-wide burden testing using MONSTER.
CTPR
CTPR software
FM-pipeline
FineMapping analysis using GWAS summary statistics
fusion_twas
methods for functional summary-based imputation
gwas
Scripts for GWAS association and metaanalysis
locuscomparer
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
GeneticResources's Repositories
GeneticResources/locuscomparer
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
GeneticResources/CTPR
CTPR software
GeneticResources/fusion_twas
methods for functional summary-based imputation
GeneticResources/GENESIS_PRS
GENetic Effect-Size distribution Inference from Summary-level data
GeneticResources/LDpred-funct
Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
GeneticResources/MR_comparison_simulations
GeneticResources/MultiABEL
Multi-Trait Genome-Wide Association Analysis
GeneticResources/analysis_pipeline
TOPMed analysis pipeline
GeneticResources/BADGERS
GeneticResources/BGData
A Suite of Packages for Analysis of Big Genomic Data
GeneticResources/cnv-ukb
Code repository for "Phenome-wide burden of copy number variation in UK Biobank" (bioRxiv:545996)
GeneticResources/collect
GeneticResources/demo_AMD
GeneticResources/exome_reanalysis
GeneticResources/GEMMA
Genome-wide Efficient Mixed Model Association
GeneticResources/goci
GWAS Catalog Ontology and Curation Infrastructure
GeneticResources/Granatum
GeneticResources/monocle-release
GeneticResources/MRMix
R package for performing Mendelian Randomization using mixture models
GeneticResources/muduo
A C++ non-blocking network library for multi-threaded server in Linux
GeneticResources/multivariate_GWAMA
Code for multivariate genome wide association meta analysis
GeneticResources/opentargets-py
Python client for the Open Targets REST API at targetvalidation.org
GeneticResources/pgc_scz_asia
GeneticResources/Pipeline-Standardization
GeneticResources/PRScs
Polygenic prediction via continuous shrinkage priors
GeneticResources/qtltools
A complete tool set for molecular QTL discovery and analysis
GeneticResources/std-nb
Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018
GeneticResources/SuRE-variants-pipeline
Collection of data processing pipelines and scripts, used for the manuscript "SNP-SuRE"
GeneticResources/tryx
GeneticResources/two-scoops-of-django-2.0-code-examples
The official repo for Two Scoops of Django 1.11 code samples migrated to Django 2.0