Pinned Repositories
AnnoPred
Genetic risk prediction integrating LD and functional annotations
bfGWAS
single class model
biotools
A list of useful bioinformatics resources
BoxPlotR.shiny
shiny application to generate box plots with R
burden_testing
A collection of scripts to run genome-wide burden testing using MONSTER.
CTPR
CTPR software
FM-pipeline
FineMapping analysis using GWAS summary statistics
fusion_twas
methods for functional summary-based imputation
gwas
Scripts for GWAS association and metaanalysis
locuscomparer
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
GeneticResources's Repositories
GeneticResources/AnnoPred
Genetic risk prediction integrating LD and functional annotations
GeneticResources/gcta
Source for a project some user wanted to see added to MacPorts. With included Eigen headers.
GeneticResources/GraBLD
an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.
GeneticResources/grstools
A bioinformatics framework for the construction and evaluation of genetic risk scores
GeneticResources/haploR
haploR: utilities for mining Haploreg and other similar web-based tools
GeneticResources/quickReg
GeneticResources/Zelig
A statistical framework that serves as a common interface to a large range of models
GeneticResources/avengeme
Additive Variance Explained and Number of Genetic Effects Method of Estimation
GeneticResources/awesome-cpp
A curated list of awesome C/C++ frameworks, libraries, resources, and shiny things. Inspired by awesome-... stuff.
GeneticResources/BSDA
R package for "Basic Statistics and Data Analysis" web page: https://alanarnholt.github.io/BSDA/
GeneticResources/c_tutorial-1
A repository for a series of youtube videos about programming in c
GeneticResources/Command-line-text-processing
:zap: From finding text to search and replace, from sorting to beautifying text and more :art:
GeneticResources/FINDOR
GeneticResources/gtx
Genetics ToolboX R package
GeneticResources/hess
Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
GeneticResources/KrumlovSingleCellTx2018
single cell transcriptome workshop in Krumlov, Jan 2018
GeneticResources/ldsc
LD Score Regression (LDSC)
GeneticResources/libplinkio
A small C and Python library for reading PLINK genotype files.
GeneticResources/mr-eve
GeneticResources/NAPLS_genotypes
Schizophrenia polygenic risk scores x conversion to psychosis + gray matter change
GeneticResources/PHESANT
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
GeneticResources/pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
GeneticResources/PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
GeneticResources/SAIGE
GeneticResources/scipy
Scipy library main repository
GeneticResources/simplestatistics
:game_die: Simple statistical functions implemented in readable Python.
GeneticResources/statsmodels
Statsmodels: statistical modeling and econometrics in Python
GeneticResources/TwoSampleMR
R package for performing 2-sample MR using MR-Base database
GeneticResources/UK_Biobank_GWAS
Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
GeneticResources/webinars
Code and slides for RStudio webinars