Error in if (!is.element(startStage, dsStages)) logger.error(c("Invalid dataset start stage:", : the condition has length > 1

[Chrisdoan9]

Hello ChrAccR,

I try to run your vignette but got this error:

run_atac("ChrAccR_analysis", "bamFilenameFull", sampleAnnot, genome="hg38", sampleIdCol="sampleId", regionSets=regionSetList, input = NULL)
2023-08-02 11:48:59 2.6 INFO Analysis directory already exists
2023-08-02 11:48:59 2.6 STATUS STARTED ChrAccR analysis
Error in if (!is.element(startStage, dsStages)) logger.error(c("Invalid dataset start stage:", :
the condition has length > 1

Would you please have a suggestion? Thank you so much!

[demuellae]

Try deleting the ChrAccR_analysis directory if you want to restart the analysis