WARNING "Could not find annotation package: ChrAccRAnnotationHg38"

[Chrisdoan9]

Hi

Would you please have a look at this? My Rstudio was stuck at this for a long time. I could not find the package: ChrAccRAnnotationHg38. Thank you so much!

2023-08-06 11:36:37 6.0 STATUS Sample 31 of 33 ...
2023-08-06 11:36:38 6.0 STATUS Sample 32 of 33 ...
2023-08-06 11:36:39 6.0 STATUS Sample 33 of 33 ...
2023-08-06 11:36:41 6.0 STATUS COMPLETED Plotting fragment size distribution
2023-08-06 11:36:41 6.0 STATUS STARTED Plotting TSS enrichment
2023-08-06 11:36:41 6.0 WARNING Could not find annotation package: ChrAccRAnnotationHg38
Loading required package: GenomicFeatures
Loading required package: AnnotationDbi
trying URL 'ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_27/gencode.v27.annotation.gtf.gz'
Content type 'unknown' length 40927910 bytes (39.0 MB)

I don't know why texts become bold.

[demuellae]

Please follow the vignette and install the annotation package:

install.packages("https://muellerf.s3.amazonaws.com/data/ChrAccR/data/annotation/ChrAccRAnnotationHg38_0.0.1.tar.gz")

[Chrisdoan9]

Thank you so much! My bad. I thought that I finished installation after this:

devtools::install_github("GreenleafLab/ChrAccR", dependencies=TRUE)

Warning in install.packages :
package ‘https://muellerf.s3.amazonaws.com/data/ChrAccR/data/annotation/ChrAccRAnnotationHg38_0.0.1.tar.gz’ is not available for this version of R

I don't know why R 4.2.2 still have this warning.