Unsuccessful installation
diazcastillo opened this issue · 3 comments
Hi,
I'm trying unsuccessfully to install chromVar using devtools::install_github("GreenleafLab/motifmatchr") using RStudio on a Mac (MacOS Sierra:10.12.4).
All I get is:
Downloading GitHub repo GreenleafLab/motifmatchr@master
from URL https://api.github.com/repos/GreenleafLab/motifmatchr/zipball/master
Installation failed: Could not find build tools necessary to build motifmatchr
Any recommendation?
Carlos
If I had to guess, are you using R 3.4.0+? Note that there's new Clang and Fortran environment requirements, which may not be native to your machine and cause Rcpp packages (like motifmatchr) to fail.
The guide from CRAN is pretty good/clear/straightforward about this--
https://cloud.r-project.org/bin/macosx/tools/
(This personally solved my issue installing chromVAR for Mac for R 3.4)
An alternative--
brew install cmake gcc
which in the latest version, should install gcc-7. You can use this instead of clang. To do so for installing mac R packages, modify the CC and CXX variables in Makevars like so:
lareauc$ head -2 ~/.R/Makevars
CC=/usr/local/bin/gcc-7
CXX=/usr/local/bin/g++-7
Installed!!! Thanks a lot.