Pinned Repositories
birch-beer
Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.
fasta
The Fasta type as used by my programs.
find-clumpiness
Find the clumpiness of labels in a Haskell or JSON formatted tree.
heatitup
Find and annotate ITDs using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.
hierarchical-spectral-clustering
Hierarchical spectral clustering of a graph.
multiomics-single-cell-t1d
Supplementary code for paper
ploterific
Basic plotting of tabular data for the command line.
spectral-clustering
Library for spectral clustering.
too-many-cells
Cluster single cells and analyze cell clade relationships with colorful visualizations.
tooManyCellsR
An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
GregorySchwartz's Repositories
GregorySchwartz/lineage
Create a lineage tree from a fasta file using shared mutations
GregorySchwartz/aa-mapper
Return the amino acid maps from the germline to the mutants within each clone in a CLIP fasta file.
GregorySchwartz/autorotate
Autorotate the screen
GregorySchwartz/autorotate-majority
Autorotation of Tablet PCs based on majority rule
GregorySchwartz/citeproc-endnote
Pandoc filter which converts LaTeX to Docx with EndNote traveling library.
GregorySchwartz/clone-size-filter
Filter for clones of a certain size in a fasta file
GregorySchwartz/ComputationalJournalClub
GregorySchwartz/count-mutations
Return the mutation counts with certain biases from the germline to the mutants within clones in CLIP fasta files.
GregorySchwartz/csv-to-fasta
Takes in a csv file and returns a fasta or CLIP fasta file with germlines and / or clones.
GregorySchwartz/DissertationDocs
LaTeX dissertation template and examples for a Ph.D. in Physics at Drexel
GregorySchwartz/gitrev
Compile git revision info into Haskell projects
GregorySchwartz/google-music-dupe-killer
Removes any duplicate songs from Google Music that have the same title and album.
GregorySchwartz/Haskell-Pipes-Library
Compositional pipelines
GregorySchwartz/hawk
Haskell text processor for the command-line
GregorySchwartz/identify-public
Count the number of files sequences appear in and add that number to the header of each sequence.
GregorySchwartz/labmate-to-sanity
Takes in a csv file and returns a cleaned and correctly formatted csv file.
GregorySchwartz/mopidy-spotify
Mopidy extension for playing music from Spotify
GregorySchwartz/org-reveal
Exports Org-mode contents to Reveal.js HTML presentation.
GregorySchwartz/refcard-org-beamer
Org Beamer reference card
GregorySchwartz/split-by-gene
Split a fasta file by the consecutive headers
GregorySchwartz/stack
The Haskell Tool Stack