HadrienG
Bioinformatician, focusing on machine learning and building software for public health.
FolkhalsomyndighetenSweden
Pinned Repositories
2019_classifiers_benchmark
Benchmarking of metagenomic classifiers
InSilicoSeq
:rocket: A sequencing simulator
nanoflow
:microscope: De novo assembly of nanopore reads using nextflow
nextflow_assembly
nextflow_sourmash
taxadb
:hatching_chick: locally query the ncbi taxonomy
tutorials
:books: Various bioinformatics tutorials
wiz
takes a metagenome-assembled-genome and does a lot of fancy stuff with it
mag
Assembly and binning of metagenomes
course
Resources for our bioinformatics course
HadrienG's Repositories
HadrienG/InSilicoSeq
:rocket: A sequencing simulator
HadrienG/tutorials
:books: Various bioinformatics tutorials
HadrienG/taxadb
:hatching_chick: locally query the ncbi taxonomy
HadrienG/nanoflow
:microscope: De novo assembly of nanopore reads using nextflow
HadrienG/2019_classifiers_benchmark
Benchmarking of metagenomic classifiers
HadrienG/wiz
takes a metagenome-assembled-genome and does a lot of fancy stuff with it
HadrienG/2018_coral_16S
HadrienG/2019-02-14-elixir-prague
HadrienG/Bioinfo
Bioinformatics
HadrienG/bigslice
A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
HadrienG/bioconda-recipes
Conda recipes for the bioconda channel.
HadrienG/blog
my blog
HadrienG/CheckM
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
HadrienG/dockerfiles
a collection of docker files for bioinformatics --
HadrienG/doctor-tracker
A menubar app to be productive and finish your PhD on time
HadrienG/dotfiles
my dotfiles
HadrienG/git-blog
Software Carpentry introduction to Git for novices.
HadrienG/gwas_benchmarks
HadrienG/hadrieng.github.io
my website
HadrienG/halftime
http://www.hadriengourle.com/halftime/
HadrienG/hmp
Hadrien's metatranscriptomics pipeline
HadrienG/KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
HadrienG/modular-code-development
Modular code development lesson.
HadrienG/nextflow-quick-intro
HadrienG/ohjh-example-notebooks
Explore your personal data with https://notebooks.openhumans.org
HadrienG/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
HadrienG/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
HadrienG/test-datasets
Test data to be used for automated testing with the nf-core pipelines
HadrienG/thesis_defence
https://www.hadriengourle.com/thesis_defence
HadrienG/tools
Python package with helper tools for the nf-core community.