HussainiLab
In vivo Electrophysiology Lab in the Department of Pathology and Cell Biology at the Taub Institute.
Columbia University Irving Medical CenterNew York, NY
Pinned Repositories
BatchTINTV3
BatchTINTV3 is A GUI created by the Taub Institute in order to create an end-user friendly batch processing solution to complement Axona's new command line modification of TINT.
BinConverter
This is a GUI that will allow the user to convert the raw (.bin) files from Axona's Tint software to their normal Tint format. This will allow the user to retroactively choose a threshold.
BinMSGUI
A Graphical User Interface that will convert the .bin data from Axona/Tint to .mda so it can be sorted by MountainSort, and then creates the appropriate sorted files.
BurstFit
Model discrete neuron firing rate data using a selection of modern regression techniques
ezTrack_GUI_Extension
gebaSpike
A Python Spike Sorting Package designed to minimize time spent cleaning spikes in Tint.
hfoGUI
Python package designed to visualize Tint LFP data.
IntanRHD2000USB
Custom RHD2000 USB software that includes a 24k Hz sampling frequency.
neuroscikit-old
This is the main pipeline for data analysis in the Hussaini Lab.
Spatial_Spectral_Mapper
HussainiLab's Repositories
HussainiLab/BatchTINTV3
BatchTINTV3 is A GUI created by the Taub Institute in order to create an end-user friendly batch processing solution to complement Axona's new command line modification of TINT.
HussainiLab/BinConverter
This is a GUI that will allow the user to convert the raw (.bin) files from Axona's Tint software to their normal Tint format. This will allow the user to retroactively choose a threshold.
HussainiLab/hfoGUI
Python package designed to visualize Tint LFP data.
HussainiLab/gebaSpike
A Python Spike Sorting Package designed to minimize time spent cleaning spikes in Tint.
HussainiLab/neuroscikit-old
This is the main pipeline for data analysis in the Hussaini Lab.
HussainiLab/Spatial_Spectral_Mapper
HussainiLab/BinMSGUI
A Graphical User Interface that will convert the .bin data from Axona/Tint to .mda so it can be sorted by MountainSort, and then creates the appropriate sorted files.
HussainiLab/BurstFit
Model discrete neuron firing rate data using a selection of modern regression techniques
HussainiLab/ezTrack_GUI_Extension
HussainiLab/IntanRHD2000USB
Custom RHD2000 USB software that includes a 24k Hz sampling frequency.
HussainiLab/ml_ms4alg_snippets
This will contain the snippets version of the ml_ms4alg code.
HussainiLab/PLOS-Biology-manuscript-data
Source data
HussainiLab/getArenaParameters
HussainiLab/hd_direction_testing
A test directory for sharing and debugging code pertaining to head direction.
HussainiLab/hussaini-lab-to-nwb
Repository for the NWB conversion and processing codes for the Hussaini lab. Currently in development. To install, clone this git repo and do `pip install -e hussaini-lab-to-nwb`
HussainiLab/intan_to_axona
This repository contains a script for converting Intan formatted electrophysiology data to downsampled axona format (eeg and egf).
HussainiLab/IntanMSGUI
Graphical User Interface that will read Intan (.RHD) data, sort using MountainSort, and then create an output to Tint (the software we use to manually curate).
HussainiLab/IntanRecordingController
A custom IntanRecordingController.exe to record electrophysiology data from an Intan Recording Controller.
HussainiLab/ml_ephys
Electrophysiology tools, mountainlab processor library
HussainiLab/ml_mask_out_artifacts
Mountainlab processor that will perform simple method of masking out large amplitude artifacts.
HussainiLab/ml_ms4alg
MountainSort v4
HussainiLab/mountainsort_examples
Examples of using MountainSort spike sorting software.
HussainiLab/MountainSortWindows
Repository dedicated to code from a tutorial for using MountainSort with Windows 10 (using the WSL)
HussainiLab/ms4_geoff_pipeline
This is a full custom MountainSort pipeline that I use to analyze data using the ms4 algorithm.
HussainiLab/NeuroMaze
HussainiLab/NSK-Backend
A fork of SignalStore for use as the NSK-Backend common repo.
HussainiLab/NSK-isolated
Scripts from NeuroScikit 1.0
HussainiLab/python-neo
Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
HussainiLab/spikeextractors
Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.
HussainiLab/wsl_terminal
This package allows you to execute commands in the WSL terminal via Python 3.