Information & Computational Sciences (ICS), James Hutton Institute
Hutton ICS staff write or contribute to a number of open source scientific projects, and we try to mirror these here to showcase the breadth of our expertise.
Scotland, United Kingdom
Pinned Repositories
agmicrobiomebase
UK Crop Microbiome Cryobank
fearlusOWL
Code to accompany the paper http://dx.doi.org/10.1007/s10980-009-9381-5
germinate-brapi
BrAPI implementation for Germinate
germinate-codegen
germinate-server
The generic plant genetic resources database
gridscore-next-server
GridScore server implementation for sharing GridScore configurations.
netlogo-jvmgr
A NetLogo extension allowing you to access information about the JVM in NetLogo
pick-a-mix-server
tablet
Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments.
utils
Various utility Java classes
Information & Computational Sciences (ICS), James Hutton Institute's Repositories
HuttonICS/tablet
Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments.
HuttonICS/blue-carbon-db
Custom metabarcoding reference databases of molluscs and plants for blue carbon tracking
HuttonICS/buntata-app
Buntata is a flexible and customisable application for aiding in the identification of plant diseases in the field.
HuttonICS/curlywhirly
CurlyWhirly
HuttonICS/germinate
Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized using common, reusable programming components.
HuttonICS/germinate-builder
Germinate Builder: A tool to easily build Germinate remotely
HuttonICS/germinate-gatekeeper
Germinate Gatekeeper
HuttonICS/gridscore
GridScore is a field phenotyping app for trials data.
HuttonICS/gridscore-server
GridScore server implementation for sharing GridScore configurations.
HuttonICS/humbug-electron
Humbug is a multi-platform barcode generator which can be used alongside our Germinate Scan application to generate sheets of user-defined barcodes to aid in the recording of data in the field or glasshouse.
HuttonICS/ieeefp
An implementation of ieeefp
HuttonICS/MDT-INTR-EXP-MET
Economics behavioural experiments using oTree
HuttonICS/NetLogo-GPL
A template for a NetLogo model to be released under the GNU General Public LIcence
HuttonICS/netlogo-jvmgr
A NetLogo extension allowing you to access information about the JVM in NetLogo
HuttonICS/netlogo-math
How is it possible NetLogo doesn't have proper trigonometric (and other) functions?
HuttonICS/netlogo-owl
An extension to Netlogo allowing export of a model's state and structure using OWL ontologies.
HuttonICS/utils
Various utility Java classes
HuttonICS/2023-12-18-JHI
HuttonICS/diversify-server
HuttonICS/diversify-web
HuttonICS/EzClermont
Phylotype your strains using Clermont's 2013 method
HuttonICS/FEARLUS-SPOMM
Scripts for supporting experiments with FEARLUS-SPOMM
HuttonICS/find_differential_primers
Code for design of diagnostic PCR primers, and metabarcoding markers.
HuttonICS/galaxy_mira
Galaxy wrappers for MIRA assembler
HuttonICS/germinate-scan
Systematically record barcodes from internal camera or external barcode scanners
HuttonICS/pick-a-mix-client
HuttonICS/RootSPHysicsV2_DB
HuttonICS/sgone
Easily identify possible duplicates in your data.
HuttonICS/SMARTEES-models
NetLogo source code from the models created for the SMARTEES project
HuttonICS/TSIS
TSIS: an R package to infer time-series isoform switch of alternative splicing