3.18.1 removes option "disable-recomposition". Not in release notes.
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olingerc commented
The option to disable recomposition was removed in version 3.18.1. This is not stated in the release notes. Is it now on by default or off? If the former, can we deactivate it?
rajatshuvro commented
We have removed variant recomposition from Nirvana. We believe it should be the variant caller's responsibility to recompose SNVs into MNVs.
I will update the release notes to reflect this.
olingerc commented
Great! I fully agree with you. Thanks for the update.